Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00408 ATGCCGCAGGATTCCTCCGAGCCGGACCTCGACGATCCCGACATCGAGTTCGTCGAGGTTGATCCAACCGGTCGCTATGGTCGGTACAAGGAAGTTTTAGGGAAAGGGGCTTTCAAGAAAGTATATCGAGGGTTTGATGAGTTGGAAGGGATTGAAGTGGCTTGGAATCAGATTAAGGTGGCGGATCTGTTGCGTAACTCTGAAGATTTGGAGCGACTTTATTCAGAGGTTCATTTGCTCAAGACTTTGAAGCATAAGAATATAATTAAGTTTTACAATTCATGGGTTGATGCCAGTAATGAGAACATCAACTTCATTACCGAAATTTTCACCTCAGGAACGTTGCGCCAATACCGGAAGAAACATAAGCATGTTGATTTGAGAGCTTTGAAGAAATGGTCTAGGCAGATTTTGGAAGGCCTTTTTTATCTTCATAGTCATAATCCACCTGTTATTCACCGGGACCTCAAGTGTGACAACATTTTTGTCAATGGGAATCAAGGGGAGGTGAAAATTGGTGATTTAGGATTGGCGGCAATCCTTCAACAGGCAAATTCAGCTCACAGTGTCATTGGTACCCCTGAGTTCATGGCACCAGAACTTTATGAAGAGGAATACAATGAACTTGTTGACATCTATGCTTTTGGCATGTGCTTGCTTGAATTGGTAACTGTTGAGTACCCTTATGTTGAATGTACCAATGCTGCTCAAATATACAAGAAAGTGACGTGTGGAATAAGGCCAGCTTCATTGGCAAAAGTTGCAGATCTTGAAGTTAGAGCATTTATCGAAAAGTGTATTGCTCATGTATCTGAACGGTTGTCTGCGAAGGACCTCTTGATGCATCCCTTCCTTCAGTCAGATAATGATGAAAGTGTAGGTCGATCTTTAAGATCCCATGCCCATCATTCAGGAAATAATTGGCATAATCAAGTTACTGGAGAAAATGCTGAGGATAACTTAGCCGAGACAAGGTTCACAGTGGAAGGTCAGAGGAGGGATAATAATACAATATTTTTAAAATTGCGAATTGCAGATTCCTCAGGTCATATTCGAAATATCCATTTTCCTTTTGATATTGAAGCAGACACTTCAACCGCCGTAGCTAGTGAAATGGTTGAGGAGTTGGAACTTACTGATCAAGATGTTACAACTATTGCTAGTATGATTGATTCTGAAATTCAATATCACATTCCTAGTTGGAATGCCAGTGAAACTCCTGTTGACGGTTTTTGTCTAGATTCATGCTGTACCCCTGAAACTAGAGCATTGGCCTCTCCTATGGCACATGATTCCGCAGCTTCTCCTAGCAGTCTTGCATTAGAAATATTACCTTCAGGTCGTAAGTACTGGTCAGACTCACCAAAGGCACTTGGAGCAAACTCTCCATCTCGAAACATTGCTTCATTCTTGTCTCATGAAGTAGATGCAAATGCTGACAAAGGCAGCAGCCCGGGTACAAATGGTGATATTTCAGCTGATGATTGTAGTGCTGAGAAGGAATGTAATGAAACTGCTGATTCCCCTTCTAGTGAGAGAAGTATTACATCAGGAGCATCTGGTGAAAAATCTTCCGAGAAAGAATTATCTGAAAGTTTGGAAGATACTGAAACAGAATACATAAATCAAATTGCAACAAATCTGGAGAATTTGTTGGTTAAACAAAAAATGGAGCTAGATGAACTAAAGAGAAAGCACAAATTAGCTGTTTCAGATCTTCTGAAGGAACTTTCACCAGAAATGTGCCAGAAGGTCCTAAATATATGCAACCTGCAGATGCCTGACGGTGAAATGTAG 1797 0.4112 MPQDSSEPDLDDPDIEFVEVDPTGRYGRYKEVLGKGAFKKVYRGFDELEGIEVAWNQIKVADLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDASNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLFYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECTNAAQIYKKVTCGIRPASLAKVADLEVRAFIEKCIAHVSERLSAKDLLMHPFLQSDNDESVGRSLRSHAHHSGNNWHNQVTGENAEDNLAETRFTVEGQRRDNNTIFLKLRIADSSGHIRNIHFPFDIEADTSTAVASEMVEELELTDQDVTTIASMIDSEIQYHIPSWNASETPVDGFCLDSCCTPETRALASPMAHDSAASPSSLALEILPSGRKYWSDSPKALGANSPSRNIASFLSHEVDANADKGSSPGTNGDISADDCSAEKECNETADSPSSERSITSGASGEKSSEKELSESLEDTETEYINQIATNLENLLVKQKMELDELKRKHKLAVSDLLKELSPEMCQKVLNICNLQMPDGEM 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00408 598 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 3 594 - -
Cca03g00408 598 MobiDBLite consensus disorder prediction 508 523 - -
Cca03g00408 598 Gene3D Transferase(Phosphotransferase) domain 1 110 293 - -
Cca03g00408 598 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Cca03g00408 598 Gene3D - 336 421 - -
Cca03g00408 598 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00408 598 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00408 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Cca03g00408 598 CDD STKc_WNK 25 285 - -
Cca03g00408 598 Coils Coil 545 565 - -
Cca03g00408 598 MobiDBLite consensus disorder prediction 478 535 - -
Cca03g00408 598 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00408 598 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 3 594 - -
Cca03g00408 598 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 340 394 IPR024678 GO:0004674|GO:0005524
Cca03g00408 598 SUPERFAMILY Protein kinase-like (PK-like) 29 286 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00408 Cca-Chr3 6350753 6355522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00408 103 597 MAP Kinase Kinase Kinase AT3G48260 53.693 2.82e-165 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Cca03g00408 Pkinase 6.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00408 K08867 - gmx:100301899 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00408 03 6350753 6355522 Cca03g00408 03 6350753 6355522 ECH