Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00404 ATGGCTCTTCTGCAATCACTTCAAGAGCAATGGCCGCCATATAAGCTAAGTTCAACTTCAACCCGTTACCTAACTGTTTTCTTCTGCTTCGTTACTTTCCTTGTGTTTATGGTTAAGCTAAGAAGAAGAAACAAGTTAAATCTGCCTCCATCGCCACCCAAGTTCCCCATAATTGGGAACCTCCATCAACTAGGAACACTCCCACACCGCTCCTTCCACGCACTCGCACACAAATATGGCCCTCTTATGATGCTGCAACTTGGCCAAGTTCCAACCCTCGTGGTCTCATCAGCTGACGTGGCCAATGAAATAATGAGAACGCACGATGTTGTTTTCTCCAACCGTCCACAACCTACGGCTGCAAGAATCTTTCTTTACGGATGCAACGATGTGGGGTTTGCGCCCTACGGCGAAGAGTGGCGACAGAAGAAGAAGACATGCGTGGTGGAGCTTTTCAGCGTGAAAAAGGTGCGGTCGTTTTGGTCCGTGAGGGAAGAGGTTGTGGCGGAGCTGGTGGAAGGCATACGCGAAGCGCGTGGCAGCGGTGAAAAGGCGCGTGTGAATCTGAGTGAGATGCTGATTGCGGCTTCGAACAACATCGTGTCTAGATGCGTTCTTGGACGGAAGTGTGATGATGCACAGGGTGGTGGGTTTGGAGTGCTTGGGAGAAAGATTATGAGACTCTTCACTGCTTTCAGCGTCGGTGATTTCTTCCCCTCGTTGGCTTGGGTTGATTCTCTCACTGGCCTCGTTCCGGAAATGAAGGCGACGTTTCTGGAAGTAGATGCTTTCTTTGATGAGGTGATTAAAGAACACGAGAGCAGAAAAACCAAGAACCATGAGTCCGATGCTGTGGACTTCGTGGGAACACTGCTTCAGCTTCAACAGAATGGGAGGCTTGATTTCCAGCTCAACCGAGACAACCTCAAAGCAATCCTAATGGACATGATAATCGGTGGAAGCGACACTACTTCAACGAATCTAGAATGGGCTATTGCAGAGCTCCTTAAAAATCCAAATACCATGAAGAAAGCTCAAGAAGAGGTAAGAAGAGTTGTGGGAATCAATTCAAGAGTGGATGAAAATTGTGTGAATCAAATGAACTACTTAAAATGTGTAGTCAAAGAAACTATGAGATTACATCCACCCGTTCCACTTTTGCTTGCTCGAGAGACTGCATCTAGTGTGAAATTAAGAGAGTACGATATTCCCCCAAAAACAATGGTGTTTATCAATGCATGGTCAATCCAAAGGGATCCTAAATTATGGGACAATCCTGAAGAGTTCATTCCTGAGAGATTTGAAAATAGCCAAGTTGATCTAAAAGGACAAGATTTTCAATTCATCCCTTTTGGTAGTGGGAGAAGGGCATGCCCTGCAATTTCGTTTGGGCTTACTTCAAGTGAGTATATTCTTGCCAATCTCCTATATTGGTTCAACTGGAAGATTCCTGAGAATGGTGTATTGATGCAAAGCATTGACATGAGTGAGACGAATGGACTCACTGTTAGTAAGAAAATACCTCTTCATCTTGAGCCAGAAGCATATGACATGATCATGTGA 1563 0.4543 MALLQSLQEQWPPYKLSSTSTRYLTVFFCFVTFLVFMVKLRRRNKLNLPPSPPKFPIIGNLHQLGTLPHRSFHALAHKYGPLMMLQLGQVPTLVVSSADVANEIMRTHDVVFSNRPQPTAARIFLYGCNDVGFAPYGEEWRQKKKTCVVELFSVKKVRSFWSVREEVVAELVEGIREARGSGEKARVNLSEMLIAASNNIVSRCVLGRKCDDAQGGGFGVLGRKIMRLFTAFSVGDFFPSLAWVDSLTGLVPEMKATFLEVDAFFDEVIKEHESRKTKNHESDAVDFVGTLLQLQQNGRLDFQLNRDNLKAILMDMIIGGSDTTSTNLEWAIAELLKNPNTMKKAQEEVRRVVGINSRVDENCVNQMNYLKCVVKETMRLHPPVPLLLARETASSVKLREYDIPPKTMVFINAWSIQRDPKLWDNPEEFIPERFENSQVDLKGQDFQFIPFGSGRRACPAISFGLTSSEYILANLLYWFNWKIPENGVLMQSIDMSETNGLTVSKKIPLHLEPEAYDMIM 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00404 520 PRINTS P450 superfamily signature 319 336 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g00404 520 PRINTS P450 superfamily signature 372 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g00404 520 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g00404 520 SUPERFAMILY Cytochrome P450 49 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g00404 520 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 19 515 - -
Cca03g00404 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
Cca03g00404 520 Gene3D Cytochrome P450 34 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g00404 520 Pfam Cytochrome P450 49 492 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g00404 520 PRINTS E-class P450 group I signature 76 95 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g00404 520 PRINTS E-class P450 group I signature 100 121 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g00404 520 PRINTS E-class P450 group I signature 196 214 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g00404 520 PRINTS E-class P450 group I signature 308 325 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g00404 520 PRINTS E-class P450 group I signature 328 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g00404 520 PRINTS E-class P450 group I signature 371 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g00404 520 PRINTS E-class P450 group I signature 412 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g00404 520 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g00404 520 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g00404 520 PANTHER CYTOCHROME P450 71B11-RELATED 19 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00404 Cca-Chr3 6301083 6306095 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00404 39 510 Cytochrome P450 AT3G48310 43.552 4.60e-146 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00404 K20617 - gmx:100792382 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00404 03 6301083 6306095 Cca03g00404 03 6301083 6306095 ECH