Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00401 ATGATTACAGATAAGATCCATAGCAAAATGGGGGAAGGAACTTTTGGGCAGGTCTTGGAGTGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATAAAAATTGTCCGTGGGATAAAGAAGTATCGAGAGGCAGCCATGATAGAAATTGAGGTACTGCAACAACTGGGGAAACACGATAAAGGTAGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAGTTATCGATCATTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTATTGGAATGTGTAGCATTTATGCATGACCTGCGCATGATCCATACTGACCTCAAGCCTGAAAACATACTTCTAGTTTCACCAGAGTATCTGAAAATTCCTGATTACAAGAGTACTTCCAAATCACCAAGTTCCTTTTTCAAGAGAGTGCCCAAGTCTAGTGCTATAAAGGTTATTGATTTTGGCAGCACTACATATGAACGAGAAGATCAGACTTACATTGTATCAACTCGTCATTATAGGGCACCTGAAGTTATCCTTGGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGTTGTATATTAGTTGAGTTGTGCACAGGTGAAGCTTTGTTTCAGACTCACGAAAATTTAGAGCATCTGGCTATGATGGAGAGGGTGCTTGGTCCTATACCGCAGCAGATGCTAAAGAGAGTCGACCGACATGCAGAGAAGTATGTCCGGAGGGGTAGATTGGATTGGCCAGAGGGTGCAACCTCCCGAGAGAGTATTAAAGCAGTAATGAAGCTTCCCCGACTACAGAATCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTTTTGCAAGGACTACTTAGATATGACCCTTTTGAGAGACTTACAGCTAGGGATGCTCTGCGACATTCCTTCTTTACGAGAGATCATCTTAGGAGATGA 1011 0.4243 MITDKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLGKHDKGSNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREIGWQLLECVAFMHDLRMIHTDLKPENILLVSPEYLKIPDYKSTSKSPSSFFKRVPKSSAIKVIDFGSTTYEREDQTYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPIPQQMLKRVDRHAEKYVRRGRLDWPEGATSRESIKAVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPFERLTARDALRHSFFTRDHLRR 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00401 336 Pfam Protein kinase domain 7 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00401 336 CDD PKc_CLK 5 329 - -
Cca03g00401 336 SUPERFAMILY Protein kinase-like (PK-like) 6 333 IPR011009 -
Cca03g00401 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Cca03g00401 336 Gene3D Phosphorylase Kinase; domain 1 5 84 - -
Cca03g00401 336 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 5 336 - -
Cca03g00401 336 SMART serkin_6 4 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00401 336 PANTHER KINASE AFC1 5 336 - -
Cca03g00401 336 Gene3D Transferase(Phosphotransferase) domain 1 58 329 - -
Cca03g00401 336 ProSiteProfiles Protein kinase domain profile. 4 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00401 Cca-Chr3 6136185 6139962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00401 9 329 Core Cell Cycle Gene Families AT1G76540 25.672 2.85e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Cca03g00401 Pkinase 7.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00401 K08287 - gmx:100808961 662.529