Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00394 ATGTCTATCACTGCCATGGCCGAAtcctgtctcctctcttctccctccgcactcttccaccccaaaaccaaaccctctctcttctcccctctctccaaacccctcactctccaattctcatgcctccactccacaccctccctctccctctccctcGCTTCCCGGACCCACCGTTCCCCCCTCCTCACGCTCGTCGCCCAAACCTCCGATTGGGCCCAACAAGAGGACCAGCAACAGGGCCTCAGCGAATCCGAAGCGGGCCTCGACGATTGGGAGCCCAACGGCCAAGTCGCCCAAGAAGAGAGCTTCGTCGAACCCCCGGAGGAGGCTAAAATCTTCGTCGGGAACTTGCCTTACGACGTCGATAGCGAGAAATTGGCCATGCTTTTCGAACAAGCCGGCACCGTTGAAATCGCCGAGGTTATTTATAACAGGGAGACTGACCAGAGTCGTGGATTTGGGTTTGTCACCATGAGTACTGTGGAAGAGGCTGAGAACGCTGTGGAGAAGTTCAATCGCTATGATTATGATGGAAGACTGTTGACTGTTAATAAGGCTTCTCCCAGAGGAGCTCGCCCTGAACGCCCTCCTCGTAGCTTTGAGCCAGCCTTAAAAGTCTATGTTGGTAATTTGCCATGGGATGTTGATAATACCAGGTTGGAGCAAATTTTCAGTGAACATGGTAAGATCGTGAATGCTCGGGTAGTCTATGACAGGGAAAGTGGTCGATCACGTGGCTTTGGCTTTGTCACGATGTCTGATGAGACAGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGTTTGGACGGAAGGGCAATTAGGGTGAGTGTTGCTGAGGACAGGCCCAGGCGTAGCTCATTTTGA 870 0.4414 MSITAMAESCLLSSPSALFHPKTKPSLFSPLSKPLTLQFSCLHSTPSLSLSLASRTHRSPLLTLVAQTSDWAQQEDQQQGLSESEAGLDDWEPNGQVAQEESFVEPPEEAKIFVGNLPYDVDSEKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAENAVEKFNRYDYDGRLLTVNKASPRGARPERPPRSFEPALKVYVGNLPWDVDNTRLEQIFSEHGKIVNARVVYDRESGRSRGFGFVTMSDETEMNDAIAALDGQSLDGRAIRVSVAEDRPRRSSF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00394 289 CDD RRM_HP0827_like 111 188 - -
Cca03g00394 289 Gene3D - 196 289 IPR012677 -
Cca03g00394 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 181 IPR000504 GO:0003723
Cca03g00394 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 276 IPR000504 GO:0003723
Cca03g00394 289 MobiDBLite consensus disorder prediction 73 92 - -
Cca03g00394 289 CDD RRM_HP0827_like 205 281 - -
Cca03g00394 289 PANTHER OS02G0815200 PROTEIN 5 85 - -
Cca03g00394 289 PANTHER OS02G0815200 PROTEIN 93 289 - -
Cca03g00394 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 282 IPR000504 GO:0003723
Cca03g00394 289 Gene3D - 63 195 IPR012677 -
Cca03g00394 289 PANTHER RIBONUCLEOPROTEIN 93 289 - -
Cca03g00394 289 PANTHER RIBONUCLEOPROTEIN 5 85 - -
Cca03g00394 289 SUPERFAMILY RNA-binding domain, RBD 196 287 IPR035979 GO:0003676
Cca03g00394 289 SUPERFAMILY RNA-binding domain, RBD 106 199 IPR035979 GO:0003676
Cca03g00394 289 SMART rrm1_1 111 184 IPR000504 GO:0003723
Cca03g00394 289 SMART rrm1_1 205 278 IPR000504 GO:0003723
Cca03g00394 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00394 Cca-Chr3 6076911 6078781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00394 112 288 Eukaryotic Initiation Factors Gene Family AT3G16380 26.554 4.70e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00394 - - gmx:100790280 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00394 03 6076911 6078781 Cca11g01765 11 42313188 42316110 ECH
Cca03g00394 03 6076911 6078781 Cca03g00394 03 6076911 6078781 ECH
Cca11g01765 11 42313188 42316110 Cca03g00394 03 6076911 6078781 PCT