Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00391 ATGGCTTCCAATGTTCATCTCTTACTCTTCTCGCTCTTTTCCCTTTTCCTCACTCTCCACGCTAAACTCCATCTCTACCCTTCAGACTTCAAGGCTCTATTAGCACTCCAAAAGTCCCTCGGAGTCAACGGTCAACTCCGGGCCAACGAAGCATGTAAGGCACAAGGCGTGTTCTGCGAGAGAAGACTCTCCGACACAGAAACCTACGTGCTCCGAATCACGAGGTTGGTGTTCAAGTCCAGGCACCTAAACGGCGTCGTCTCACCCTCCATTGGACGCCTCACAGAGCTCAAGGAACTCACCCTCTCCCACAACCAACTCGTTGACCGACTCCCTCCACAAATCGTTGACTGCCGAAAACTCGAAATCCTCGACCTCTCCGACAACCTCTTCTCCGGCGAAGTCCCCTCCGAATTGTCCTCCCTCACGCGCCTGCGCCTGCTCGACATCTCCTCCAACAAACTCTCCGGCAACCTCAATTTCCTCAAACACTTCCCCAACCTCGAAACTCTCTCCGTCGCCGACAACCTCTTCACCGGAAGAGTCCCTCCCTCGCTCCGCTCCTTCCGCAACCTCCGACACTTCAACTTCTCCGGTAACAGCTTCCTCGAACCGGTTTCCACTCTCTCTAGACGCTACCTTTTATCCAGTGAAGCTCCTTCTCCGGGACCTTCTTCACACAAGACACACTCCAACCGTTCTAACGCCGCAGCAGCAGCAGCTCCTGCTCCTTCTTCTAACCACCACCATAGACACAAATCCAGTAAGAGAAAAATCGCAGGGTGGATTCTCGGCTTTGTCGCTGGAGCCATCGCGGGAACCTTATCGGGGTTTGTTTTCTCTCTTCTGTTCAAACTGGCTTTGGCTTTGATCAAAGGAAGAGGCAAAAGAGGTGGACCTGATATTTATAGTCCCTTGATTAAGAAAGCCGAAGATTTAGCCTTTTTAGAAAAAGAAGAAGGAATCGCTTCAGGTGGGTGTGGTGAGGTTTACAAAGCTGAATTACCAGGAAGCAATGGCAAACTAATCGCCATAAAGAAAATCGTTCAACCTCCAAAGGACGCTGCTGAGTTAGCAGAAGAAGACAGCAAGCTTCTGCATAAGAAAATGAGGCAAATTAGGTCAGAAATCAACACGGTTGGCCAAATCAGACACCGAAATCTGTTGCCTCTTCTTGCACACGTGTCAAGGCCTGATTGCCACTACCTTGTCTACGAGTTCATGAAGAATGGAAGCTTGCAAGATACTCTAAGCAAAGTTGAAAGAGGTGAAGCTGAGTTGGATTGGTTGCAGCGCCACAAGATTGCTCTTGGTGTGGCTTCTGGACTTGAATACCTTCACCTGAATCACAGTCCTCGCATAATTCACAGAGATCTTAAGCCTGCGAATATTCTCCTTGATGATGACATGGAGGCTCGCATAGCTGATTTTGGACTCGCCAAGGCAATGCCGGATTACAAGACTCACATAACAACCTCAAATGTGGCGGGGACAGTGGGGTATATTGCTCCTGAGTATCATCAGATTCTTAAGTTCACTGATAAGTGTGATATATACAGCTTTGGGGTTATTCTTGGGGTGTTGGTCATTGGGAAGCTTCCTTCCGACGAGTTCTTTCAGCACACTGATGAGATGAGTTTGGTCAAGTGGATGAAGAAGGTCTTGAGTTCTGAGAATCCCAAGGAGGCAATTGATGCTAAGCTTCTTGAGAACGGATCACGCACTGAATCACTTGGATTGCTGAATTTCCGGAAAACAGAAAAGAGAAAGAGAAATTAA 1779 0.4857 MASNVHLLLFSLFSLFLTLHAKLHLYPSDFKALLALQKSLGVNGQLRANEACKAQGVFCERRLSDTETYVLRITRLVFKSRHLNGVVSPSIGRLTELKELTLSHNQLVDRLPPQIVDCRKLEILDLSDNLFSGEVPSELSSLTRLRLLDISSNKLSGNLNFLKHFPNLETLSVADNLFTGRVPPSLRSFRNLRHFNFSGNSFLEPVSTLSRRYLLSSEAPSPGPSSHKTHSNRSNAAAAAAPAPSSNHHHRHKSSKRKIAGWILGFVAGAIAGTLSGFVFSLLFKLALALIKGRGKRGGPDIYSPLIKKAEDLAFLEKEEGIASGGCGEVYKAELPGSNGKLIAIKKIVQPPKDAAELAEEDSKLLHKKMRQIRSEINTVGQIRHRNLLPLLAHVSRPDCHYLVYEFMKNGSLQDTLSKVERGEAELDWLQRHKIALGVASGLEYLHLNHSPRIIHRDLKPANILLDDDMEARIADFGLAKAMPDYKTHITTSNVAGTVGYIAPEYHQILKFTDKCDIYSFGVILGVLVIGKLPSDEFFQHTDEMSLVKWMKKVLSSENPKEAIDAKLLENGSRTESLGLLNFRKTEKRKRN 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00391 592 SMART serkin_6 316 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00391 592 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 6 575 - -
Cca03g00391 592 SUPERFAMILY L domain-like 68 205 - -
Cca03g00391 592 Pfam Protein kinase domain 317 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00391 592 Gene3D Ribonuclease Inhibitor 26 228 IPR032675 -
Cca03g00391 592 Gene3D Transferase(Phosphotransferase) domain 1 408 586 - -
Cca03g00391 592 Gene3D Phosphorylase Kinase; domain 1 308 407 - -
Cca03g00391 592 SUPERFAMILY Protein kinase-like (PK-like) 316 561 IPR011009 -
Cca03g00391 592 MobiDBLite consensus disorder prediction 217 253 - -
Cca03g00391 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Cca03g00391 592 Pfam Leucine rich repeat 96 155 IPR001611 GO:0005515
Cca03g00391 592 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 575 - -
Cca03g00391 592 MobiDBLite consensus disorder prediction 217 241 - -
Cca03g00391 592 ProSiteProfiles Protein kinase domain profile. 316 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00391 Cca-Chr3 6040766 6043188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00391 7 581 Receptor kinase-like Gene Family AT2G31880 62.689 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Cca03g00391 Pkinase 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00391 - - gmx:100811980 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00391 03 6040766 6043188 Cca03g00391 03 6040766 6043188 ECH