Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00385 ATGGACGCATACGTTTCTCCGATCACCCAAGATTTATCTGAACCCGACATTTATTTATACACTCCCAGTGGGAAGCGCATCCCAGTGCACGCATCCATTTTGGCTTCGGCATCCCCAGTTCTAGGAAACGTGATAACGTGGAAGGGAGCCGTTAAAATCCAGGGCGTCCCAGACGGCGCCGTGACGGCGTTCGTAGAGTTTCTGTACTCGTCCAGgtgcaggtgcaggtgcagggaggaggaggagatggagatggagatggagaAGTACGGAATGCACCTTCTAGCGTTGTCGCACGTGTATTTGGTGAGGGTTTTGAAGCAGAGGTGCGTGGAAGGACTGGGGAAGCGCGTGAGCACGGAGAACGTGGTGGACGTGTTGGAACTGGCGAGGCTCTGCGACGCACCCGATCTTTACCTCAAGTGCGCCAAGCTTCTCGCGAGTCATTTCAAATCCGTGAGGGAAACAGAGGGGTGGAAGTTTCTCCAAACCCACGACCCGTGGCTGGAACTCGAGATTCTCCGCTTCATGGACGAACACGAAAAGaggaagaggaaatcgaggaagcggagggaggaggagaggGTGTACGCGGAGCTGAGCGAGGCGATGGAGTGTTTGGAGCACATTTGCACGGAGGGGTGCACGCACGTGCGGCCGTGCGATGTGGAGGGTGGGCGAGGGAGAGGACCGTGTAAGAAGTTCGGCACGTGCGAGGGTGTTCAGGTGCTGATTCGGCACTTTGGAACGTGCCAGAGGAGGGTGAAGGGAGGGTGTTTGCGGTGTAAGCGCATGTGGCAGCTCTTTAGACTCCACTCTTCTATTTGCCTATGCCAACATTCATGCAAGGTTCCTCTTTGCAGGCAAATTCGAATGAAAAAGGAGGAAGAGAACAGAAAAGATGACGCAAGGTGGAAAGTACTAGTGAGGAAAGTGGCCTTGGCTAAAGCCATGTCTTCCTTGGCACTGCCAAAGAGGAAGAGGGATGAGGAAACTAGACCTGAGTAA 1008 0.4921 MDAYVSPITQDLSEPDIYLYTPSGKRIPVHASILASASPVLGNVITWKGAVKIQGVPDGAVTAFVEFLYSSRCRCRCREEEEMEMEMEKYGMHLLALSHVYLVRVLKQRCVEGLGKRVSTENVVDVLELARLCDAPDLYLKCAKLLASHFKSVRETEGWKFLQTHDPWLELEILRFMDEHEKRKRKSRKRREEERVYAELSEAMECLEHICTEGCTHVRPCDVEGGRGRGPCKKFGTCEGVQVLIRHFGTCQRRVKGGCLRCKRMWQLFRLHSSICLCQHSCKVPLCRQIRMKKEEENRKDDARWKVLVRKVALAKAMSSLALPKRKRDEETRPE 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00385 335 Coils Coil 183 210 - -
Cca03g00385 335 Gene3D TAZ domain 189 322 IPR035898 -
Cca03g00385 335 Pfam BTB/POZ domain 15 114 IPR000210 GO:0005515
Cca03g00385 335 ProSiteProfiles BTB domain profile. 15 72 IPR000210 GO:0005515
Cca03g00385 335 SUPERFAMILY TAZ domain 192 292 IPR035898 -
Cca03g00385 335 CDD BACK 119 162 - -
Cca03g00385 335 PANTHER BTB/POZ AND TAZ DOMAIN PROTEIN 8 333 - -
Cca03g00385 335 Gene3D - 119 188 - -
Cca03g00385 335 SUPERFAMILY POZ domain 16 148 IPR011333 -
Cca03g00385 335 SMART TAZ_2 194 288 IPR000197 -
Cca03g00385 335 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 8 333 IPR044513 -
Cca03g00385 335 Gene3D Potassium Channel Kv1.1; Chain A 8 118 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00385 Cca-Chr3 5991258 5995694 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Cca03g00385 BTB 4.5e-06 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00385 - - gmx:100813611 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00385 03 5991258 5995694 Cca03g00385 03 5991258 5995694 ECH
Cca11g01758 11 42248057 42251216 Cca03g00385 03 5991258 5995694 PCT