Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00382 ATGACAAGCACTCCACTCTCTTTGCTTTTCATGCTCTTCTCCCTTCTCACTCCAACCCTCATTTCCTCTTCACATGTTCTAAACCCTGAATCTGTCGTACAAGAGGTAAACAGGCAAAGGCTAGCAGACTGTGCAATCGGGTTCGGCAAGAACGCCGTGGGAGGGCGCGACGGGAAGATTTACGTGGTGgacgacgacggcgacgacgacgCGGTGAACCCTAAGCCGGGGACACTGCGGCATGCGGTGATCCAAGACGAGCCACTGTGGATCATCTTCGCGAGAGACATGGTGATCAAGCTGAAGGAGGAGCTGATCATGAACTCCTTCAAGACCATCGATGGCAGAGGGTCTAGCGTCCACATTGCGGGTGGTCCATGCATCACCATACAGTTCGTGACCAACGTCATCATTCATGGCATTCACATACACGATTGCAAGCAGGGCGGGAACGCTATGGTGCGGGACTCCCCACGCCACTACGGCTGGAGAACCGTCTCGGACGGTGATGGGGTGTCCATCTTTGGAGGGAGTCACATTTGGGTCGACCATTGCTCCTTGTCCAACTGCAACGACGGCTTGATCGATGCCATCCATGGCTCCACTGCCATCACCATCTCCAATAATTATATGACGCATCATGATAAGGTCATGTTGTTGGGTCACAGTGACTCTTACACCCAAGACAAGAACATGCAAGTCACTATTGCTTTCAACCACTTTGGTGAAGGCCTTGTTCAAAGGATGCCGAGGTGTAGGCATGGGTATTTCCATGTGGTGAACAATGATTATACTCACTGGGAAATGTATGCCATTGGGGGAAGTGCTAATCCAACCATCAACTGCCAAGGCAACAGATTTGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAACGTGAGGATGCACCAGAGAGTGAATGGCAGGGTTGGAATTGGAGGTCAGAAGGGGATTTGTTGGTAAACGGTGCGTTTTTTACTCCATCGGGTGCTGGAGCCTCTTCTAGCTATTCAAGGGCTTCTAGCTTAAGTGCAAGACCATCTTCACTTGTTGGTTCTATAACAACAGCTGCTGGTGCACTCACATGTAAGAAAGGTTCTCCTTGCTGA 1113 0.4942 MTSTPLSLLFMLFSLLTPTLISSSHVLNPESVVQEVNRQRLADCAIGFGKNAVGGRDGKIYVVDDDGDDDAVNPKPGTLRHAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGSSVHIAGGPCITIQFVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINCQGNRFVAPDDRFSKEVTKREDAPESEWQGWNWRSEGDLLVNGAFFTPSGAGASSSYSRASSLSARPSSLVGSITTAAGALTCKKGSPC 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00382 370 Pfam Pectate lyase 103 287 IPR002022 -
Cca03g00382 370 PRINTS Pollen allergen Amb family signature 44 61 IPR018082 -
Cca03g00382 370 PRINTS Pollen allergen Amb family signature 68 93 IPR018082 -
Cca03g00382 370 PRINTS Pollen allergen Amb family signature 104 120 IPR018082 -
Cca03g00382 370 PRINTS Pollen allergen Amb family signature 168 189 IPR018082 -
Cca03g00382 370 PRINTS Pollen allergen Amb family signature 248 267 IPR018082 -
Cca03g00382 370 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Cca03g00382 370 PRINTS Pollen allergen Amb family signature 312 336 IPR018082 -
Cca03g00382 370 PRINTS Pollen allergen Amb family signature 341 364 IPR018082 -
Cca03g00382 370 PANTHER PECTATE LYASE 18-RELATED 35 367 IPR045032 GO:0030570
Cca03g00382 370 Gene3D - 27 363 IPR012334 -
Cca03g00382 370 PANTHER PECTATE LYASE 35 367 - -
Cca03g00382 370 SUPERFAMILY Pectin lyase-like 36 361 IPR011050 -
Cca03g00382 370 SMART amb_all 96 293 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00382 Cca-Chr3 5962244 5964763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00382 1 370 Polysaccharide Lyase AT5G63180 73.350 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00382 K01728 - gmx:100814679 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00382 03 5962244 5964763 Cca11g01757 11 42227238 42229309 ECH
Cca01g00144 01 1414696 1417135 Cca03g00382 03 5962244 5964763 ECH
Cca03g00382 03 5962244 5964763 Cca03g00382 03 5962244 5964763 ECH
Cca11g01757 11 42227238 42229309 Cca03g00382 03 5962244 5964763 PCT