Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00381 ATGATGGAAGGGCGACGACATTCAGTTGATATTCCAATTTCTAAGACTCTCGTGGCACTGAGGAGAGTTAGGTCATTGCGGGATCCGTCAACCAACCCTATGAGCAAACTCTCTTCTTTGGTTGATAATGTGCACTGGGAAAACGGTTCTGGTAATGACATCTCCCTGCGGTTTTCGGATGCTGCTCGGCCGGGTGATTCGCATGATAATGCTGCTTTCAGATCAAGGAACTTTGGTTTTAAGGGACAAAGGGAGCACAATGATGCTGACTTTGTATTGAATTCTGGCATATTGAACTCAAGGTTGAAGCCTAGTGGGATGTCATGTCAGGATGGTAAACAGGATGGTGAACTAGTTTACTCTAAGCCTAATCTCCAGTGCATTTCAGGAAATAAATCACCAAGTGAAAGCTGTGGTAGCAACCATGGGGGTAGAGAGTTGGACTTGGCTTGTGTTGTGCTTCCAAGTAATAATTTCAAGGATGGGGGTTTATGCTATACAGCAACAGCTAGATCATCTCAATTAGGGAAAATAGATTGCTGTAAGTCAGCCAAAAAGTCTCTGCGCAAGAATCAAGTGAAGCCATCAGAGGTAGTGGGTAGTATTGCTAGCCATGTAGGAAGTCCATGCCCTTCTGGTTATGATGCTTTTTCTCCCCATAGTACTTCAGTAGGCGTAAATCAAGATGTTGATGTTTTAGATCATAATGATAATGGATGTGGAGTAAGCTGCTGTTGGTCAAAATCACCAAGGTTTAGAGGATCAAATCTATATGGTGAGATAGAAGACCGTCCCTTGATATCGCTGCGTGTTGATGAGACAGATCTTCATGCACACAGAAGCATGAGACACAATGGTGGTGGGATTAGTCCAAATTTGGAAACTCCTAGAAGTTTATCTATGAAATTTAGGCCAAAATCTTTTTGTGATTTGGTGGGACAAAATGTGGTAGTAAGGTCTCTCTTGGGTGCCATTTCCAGAGGGAGGGTAACATCATTTTATCTCTTCCATGGTCCACGTGGTACTGGCAAGACATCGGCCTCTAGGATTTTTGCTGCTGCACTGAATTGCCTCTCTGTTGAGGAGCAAAGGCCATGTGGCCTATGCAGAGAATGTGTTATGTTCTTTTCAGGAAAATGTATAGATGTTAAGGAAGTGGATTCTGTGAGAATCAATAGACAAGACCAGGTTAAATCCCTTATTAAGAATGCAAGCATCCCTCCAGCTTCCTCACGTTTTAAGGTTTTCATTATTGATGAGTGCCAGTTATTGAATGAGGAGACATGGGCAAGCATTTCAAGTAGCGTAGAGAACATTTCTCAACATGTTGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCGAAGTGCACTTTCCCGGGCTCAGAGGTATCACTTTCCGAAGGTTAAAGATGCTGACATTGTATTCAGATTAGAAAAAATTTGTGTCGAAGAAGGTCTGGATTTTGAACAGGACGCTTTGGACTTTATTGCTGCAAAATCATGTGGTTCTGTTAGGGATGCAGAAATGATGCTTGATCAGATGAGTTTGCTTGGAAAAAAGATCAATATTTCTTTAGCTTACGAACTTACTGGGATCGTTTCTGATGATGAGTTGCTTGATTTGTTGGATCTGGCTTTGTCATCTGACACTTCAAATACAGTTATAAGAGCTCGAGAGCTGTTGAGATCAAGGATAGATCCTTTGCAACTTGTATCACAGCTGGCAAATCTCATTATGGACATCCTTGCAGGGAAATGTGAAAATGGCGGTTCTGAAGTCAGAAGTAGATTTTCTAGGAGATACACATCGGAAGCTGATCTGCAGAAACTAAACAATGCATTGAAAATACTTTCTGAAACTGAGAAGCAGTTAAGAATTTCAAAGAATCAAACAACATGGTTCACCGTAGCTCTCCTACAGTTAAGCTCAGCAGATTATCCATCTGTGGATGCAAATGATATCAAGTTGAGTCTGAGAGGTGCATGCAATGGAGGTCAAAGCTTGGAACATTTTGCTACAGGCTTGTGTGCTAGCAAGTCATACAAATTAGGAGTGTCGGAGGATCACCAAGGAACATTGGATTCCATTTGGTATAAAGCTACAGAGATGTGTCATTCGGGTTGGCTCAAAACTTTTCTCAGGAAGAAGGGGAAGTTGTCTTCACTTCATGTTGACCGCAGTCTTGCTATTGCCGAGTTGGAGTTCCACCATCGCCACCATGTATCAAAGGCTGAGAAGTCATGGAAAGTGATCGCAAGCTCCTTGCAGTTCTTATTAGGTTGCAACATTGAGTTGAGGATCACTTATGCACCATGTGCTTCTGATTCTAAGTATGCCAAGATGAAGAGATCATCTTTAAGTATCTTCGGTTGCTCACGCAGAATTCGACAACAGAAGTCATTATCATCCAATGAACAAGGAAATGAATCAGATTATGCTGATTACAACTCTGAAAATCCCATGATGAAGGGTAGAATCTCTACCTCTGATTGTGGAATGGATGCTGTAACGGCTTTGAGGAGTTGCGAAGGGAATTTGCTCAGCTCAGGAGAAAGATTTCTGAATAGATCATTTCAAGAGACTACGGGGACATCATGTGCTGGAGTGGATTCCTCCAAGGAAGAGAGATGCAATTGTGCACATCTAGATCAAAAAATTCTCGATTCAGATAACAATTCTATCTGTTTTCCGAAATCTCTTTGGCTTCAAAAGAAGTTCCGTTCTTCATATTCATCCAAGTTGGCTTTTCAGGGTGTTCAACAACAGAATGATTTTGTTTTATCTGTTCCCAAGTGTACATGTTCTGGGACATATACCCATGCTAACGAACCCTATTTTTTCCAGTAG 2856 0.417 MMEGRRHSVDIPISKTLVALRRVRSLRDPSTNPMSKLSSLVDNVHWENGSGNDISLRFSDAARPGDSHDNAAFRSRNFGFKGQREHNDADFVLNSGILNSRLKPSGMSCQDGKQDGELVYSKPNLQCISGNKSPSESCGSNHGGRELDLACVVLPSNNFKDGGLCYTATARSSQLGKIDCCKSAKKSLRKNQVKPSEVVGSIASHVGSPCPSGYDAFSPHSTSVGVNQDVDVLDHNDNGCGVSCCWSKSPRFRGSNLYGEIEDRPLISLRVDETDLHAHRSMRHNGGGISPNLETPRSLSMKFRPKSFCDLVGQNVVVRSLLGAISRGRVTSFYLFHGPRGTGKTSASRIFAAALNCLSVEEQRPCGLCRECVMFFSGKCIDVKEVDSVRINRQDQVKSLIKNASIPPASSRFKVFIIDECQLLNEETWASISSSVENISQHVVFVMITPDLDKLPRSALSRAQRYHFPKVKDADIVFRLEKICVEEGLDFEQDALDFIAAKSCGSVRDAEMMLDQMSLLGKKINISLAYELTGIVSDDELLDLLDLALSSDTSNTVIRARELLRSRIDPLQLVSQLANLIMDILAGKCENGGSEVRSRFSRRYTSEADLQKLNNALKILSETEKQLRISKNQTTWFTVALLQLSSADYPSVDANDIKLSLRGACNGGQSLEHFATGLCASKSYKLGVSEDHQGTLDSIWYKATEMCHSGWLKTFLRKKGKLSSLHVDRSLAIAELEFHHRHHVSKAEKSWKVIASSLQFLLGCNIELRITYAPCASDSKYAKMKRSSLSIFGCSRRIRQQKSLSSNEQGNESDYADYNSENPMMKGRISTSDCGMDAVTALRSCEGNLLSSGERFLNRSFQETTGTSCAGVDSSKEERCNCAHLDQKILDSDNNSICFPKSLWLQKKFRSSYSSKLAFQGVQQQNDFVLSVPKCTCSGTYTHANEPYFFQ 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00381 951 SUPERFAMILY post-AAA+ oligomerization domain-like 541 644 IPR008921 GO:0003677|GO:0006260
Cca03g00381 951 Gene3D - 472 534 - -
Cca03g00381 951 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 108 940 - -
Cca03g00381 951 Coils Coil 610 633 - -
Cca03g00381 951 Gene3D - 535 647 - -
Cca03g00381 951 MobiDBLite consensus disorder prediction 802 822 - -
Cca03g00381 951 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 108 940 - -
Cca03g00381 951 MobiDBLite consensus disorder prediction 802 818 - -
Cca03g00381 951 Pfam DNA polymerase III, delta subunit 314 471 - -
Cca03g00381 951 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 298 644 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Cca03g00381 951 SMART AAA_5 330 473 IPR003593 -
Cca03g00381 951 CDD HLD_clamp_pol_III_gamma_tau 471 534 IPR045085 -
Cca03g00381 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 520 IPR027417 -
Cca03g00381 951 Gene3D - 292 469 IPR027417 -
Cca03g00381 951 CDD AAA 312 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00381 Cca-Chr3 5902530 5907240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00381 289 536 Core DNA Replication Machinery Family AT1G21690 25.000 8.19e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00381 - - gmx:100819111 1588.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00381 03 5902530 5907240 Cca03g00381 03 5902530 5907240 ECH
Cca11g01756 11 42188383 42202337 Cca03g00381 03 5902530 5907240 PCT