Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00376 ATGGGAGGAGCTTCCGAGGACGTTCTGCCCTGGCTCAAATCACTGCCGGTGGCGCCGGAGTACCGCCCCACCGTCGCCGAGTTCCAAGATCCAATCGCCTACATATTCAAGATCGAGAAGGAAGCTTCCAAGTACGGCATCTGCAAAATCATCCCTCCCTTCCCGCCTTCCCCAAAGAAAACCGCCATCGCCAACCTCAACCACTCGCTCGCCGCCGTCGCCGGCTCCACATTCACCACGCGCCAGCAGCAGATCGGCTTCTGCCCCCGCCGTCCGCGCCCCGTCCAGCGTCCAGTCTGGCAGAGCGGCGACCACTACACCTTCCACCAGTTCGAGTCCAAGGCCAAGTCCTTCGAGAAAACGTACCTCAAACGCCACGCCAAGAAgggctcgggctcagcctcggcctcagcctcgggctccggcctcggcctcagccCGCTCGAGACGGAAACGCTCTTCTGGAAGGCCACGCTGGACAAACCCTTCTCCGTCGAGTACGCCAACGACATGCCGGGCTCCGCGTTTTCCCCCAAATGCCGCGACGCAGGGGATCCCAGCTCCCTCGCGGACACTCCCTGGAACATGCGCGCCGTTTCTAGGGCCAACGGCTCGCTCTTGCGCTTCATGAAGGAGGAGATTCCCGGCGTCACTTCCCCCATGGTCTACGTCGCCATGCTCTTCAGCTGGTTCGCCTGGCACGTCGAGGACCACGACTTGCACAGTTTGAACTACCTCCACATGGGCGCCGGCAAGACCTGGTACGGCGTCCCGCGCGACGCCGCCGTCGCTTTCGAGGAAGTCGTTAGGGTTCACGGCTACGGCGGCGAGATTAACCCGCTCGTTACTTTTGCTATTCTTGGTGAGAAAACCACAGTGATGTCGCCTGAAGTATTTATTAGTGCAGGTGTTCCATGCTGCAGGCTAGTACAAAATGCTGGGGAATTTGTTGTGACGTTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGCTTTAATTGTGGAGAGGCAGCAAACATTGCAACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCAATTCGGAGGGCTTCACTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCATTGTGTTCTAGAATTCCAGCGGGCATCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAACAGTAATTAAAGAACTATTTGTCCAAGATGTGTTACAGAACAATGATCTGCTTCATATACTTGGGAAAGGATCTCCTGTAGTATTTCTTCCTCGTAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAGCAATCCATCAATGTAAGCAATTCTGAGGGAATGCATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTCAACAGGAGTCATGGAATCAAGCAAGAAAAAAGTTTCTATTCTGTGAGAGACAAGTTTACTACATTGTATGAAAGGAACAGGATTTCCTCTTTTGATGCAAATGGTAATGTAAGCACTTCCAGTTCTAAGCCAATTCAAAGAGACAATGAAAGAGAAACTAGCCAAGGAGAAGGATTATCAGATCAGAGACTGTTTTCTTGTGTCACGTGTGGAATATTAAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATATCTAATGTCAGCTGATTGCAGCTTCTTTAATGATTGGGTTGTTGGCTCTGGAATTGCAATTGACGGTCATGAATCAAATGTGATAAACCCTGCTTCTGAAAGTTTACTTTCTCATACTCAAGATACTCAAGATTCCCATGCTAGTCCCATGACTGTACTAGATAGGAGAGATGATATTCCTTCAAAGAGTGCTGATTATGAGGATTTTATGCATCGTAGATTTGAGTGTAATTTGAGTCATCAGTCCTTAGACCACTCGCTTAAGAAACAGGATTATAATATCACATCAGGGGTTACATTTGAAAATTCAAGGACGGTTCCTAATTCCACCTCTAATTGTTCCCAAGATGCTCATGATGCTGAAAGGTCGTTGTCTAACAAGCCTATGATTCCCTTTGATAATAAAAATGCTTCAATGGTGCTACAATCCGATGAAGACTCATCCAGAATGCATGTTTTTTGTCTAGAGCATGCTATAGAAGCAGAGCAGCAACTTCGTCCAATAGGTGGAGCCCACATATTGCTCCTTTGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAATTGGTGGCAGAAGATTTGGGGATTGATTACATGTGGAAGGATACTGCATACAGGCATGCTTCCAAGGAGGATGAGGAGACGATCCAATCGGCTTTGGATAGTGAGGAAGCTATTCCTGGGAATGGTGACTGGGCTGTAAAGCTAGGAATCAATCTCTTTTATAGTGCAAATCTGTGCCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATACTATGCATTTGGTTGTAGCTCTCCAGCAAGCTCACCTGTAGAGCCAAAGGTCTACCAAAGAAGGGTCAACAAGCAGAAAAAGGTTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTACATCCCCTTTTAGCAAAAAGAGATTCTGAAGATGTTGAGGATGAGAAACTCATACTTGGGTGGATATTATCTGATGAGAAAATTGAGAGATCAGAAAGTACCCCCAAAAGTGAAACTACTAGCAGAAAATCAGTTTCAGATAATTCCACTGAAGATAAACCCAACTCACAGCCAAGGAGGATTCTTAGAAGTAAGAAGAAAGCCAGGCATGTTGACAGAGACGGTGCTGCTTTGAAAGGGGATTATTCTCCTCCATATCATCATAGAAAACCTATAAGCAAGCGAACAAACTGCACTGAAAGTGATGCGGTTTCTGATGATTCGCTTGATGATGATGATGATTACATGCAGCATAGGAGGAATGTTAATGTTGAAAAAGCTAAATTTATTGACAATGATGTGGTTTCAAATGATTCAGTGGACTGTGATTCTGACTGGCAGCAGAGGGCAGAACTAAGCAGCAAGCAAGTTGAAGATACAGAGAGAGATGATATTTCAGAGGATTCTTTGGATGTTGTTTCTCTTCAGCTGCAAAGGAAGACTTCCAAAGGCAAGCATGCTAAATACATTAGCGAAGAAGATATAATTTCTGATGACCAAATGGAGAGTCATTTTCAAAAGCGGCAAAGGAGAATTCCTAAAAGCAGGCAAGGCAGATACATTACTGGAAAAGATATCACATCTGATGACCAACTAGAGCTGAAAGTGCAGAAGCAGCAACGAAGGAATCCTAAAAGCAGGCAAGCCAAATACCTCAATGGAGAGGATATTGCATCAGACGACCAATTGGAGGGCCATTTTCGTAAGTATCAAAGAAGGACTCCTAAGGGCAGGCAGGCCAAATGTGGGGCAGGGGAAGATGACATGTCTGATGACCAATTGGAGGATCATTGTCTGAAGCAGCAAACAAGTTTCTCTAGGAAAAGGCAAAACAAAGGCATTGATAGAGAAGTTAAAAATGAAATATCTGATGACCAATTGGAGGATCATTTTCAGAAGCAGCAGAGAAGATTTCCTAAGAGCAAGCAAAACAAACACACTGATAAAGAAGTTTTGGATGACTTGGCTGAAAATAATTCTCATCTGCTGCATAGAACTCCTAAAAAGAAGCAAGCTAAATGCATGGACGAAGATGATATGAATTCTGATGATGAAATGGAAGATGATCAGCAGTTGAGGAGAACTCTTCGTAGTAAACAATCGAAACCAAAGACACTTCAACAGATGAAGCAAGCTAATACCCTCCAAGTGAAAAATCAGGCATCTCGGCCCTTAAAACGGGGTTCTCGGATACTTATGAAATCAAAGACTCCTCAGCAAACAAAACAGTCTTCTCATTTGCGGAATAAGCAATCGAGCAACTCTCAGGAGTTTAGTTTACATATGGAAGAGGAGGAAGAAGGTGGACCGAGCACACGCCTTAGGAAGAGAGCCACAAAAGGTCAGGAATCTGAAGGAAAATTGAAAGGCAAGCAAACAAAAAGGAAGAAGGTGAAGAATGCTACAGCTGCAAAGGTTTCGGTTGGCCATGCCAAAATGAAGGATGGGGAGCCAGAATATCAGTGTGATATTGATGGGTGCACTATGAGTTTTGGGTCGAAACAGGAGCTGCTGCATCACAAGAGAAATATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAGTATCTGGTGCAGCACCGTCGAGTTCACGAGGATGAGCGTCCCTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCGTGGGCTCGTACTGAGCACATTCGAGTCCACACTGGTGAACGGCCTTATGTGTGTGCTGAACCAGGTTGTGGACAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCAAAGAAGAGTCGTCAATAG 4530 0.4475 MGGASEDVLPWLKSLPVAPEYRPTVAEFQDPIAYIFKIEKEASKYGICKIIPPFPPSPKKTAIANLNHSLAAVAGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDHYTFHQFESKAKSFEKTYLKRHAKKGSGSASASASGSGLGLSPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRDAGDPSSLADTPWNMRAVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPAGISAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHILGKGSPVVFLPRSSVDISVCSKLRVGSQQSINVSNSEGMHSSKGFVSDDLVFNRSHGIKQEKSFYSVRDKFTTLYERNRISSFDANGNVSTSSSKPIQRDNERETSQGEGLSDQRLFSCVTCGILSFSCVAIVQPREPAARYLMSADCSFFNDWVVGSGIAIDGHESNVINPASESLLSHTQDTQDSHASPMTVLDRRDDIPSKSADYEDFMHRRFECNLSHQSLDHSLKKQDYNITSGVTFENSRTVPNSTSNCSQDAHDAERSLSNKPMIPFDNKNASMVLQSDEDSSRMHVFCLEHAIEAEQQLRPIGGAHILLLCHPDYPKIEAEAKLVAEDLGIDYMWKDTAYRHASKEDEETIQSALDSEEAIPGNGDWAVKLGINLFYSANLCRSPLYSKQMPYNSVIYYAFGCSSPASSPVEPKVYQRRVNKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDEKLILGWILSDEKIERSESTPKSETTSRKSVSDNSTEDKPNSQPRRILRSKKKARHVDRDGAALKGDYSPPYHHRKPISKRTNCTESDAVSDDSLDDDDDYMQHRRNVNVEKAKFIDNDVVSNDSVDCDSDWQQRAELSSKQVEDTERDDISEDSLDVVSLQLQRKTSKGKHAKYISEEDIISDDQMESHFQKRQRRIPKSRQGRYITGKDITSDDQLELKVQKQQRRNPKSRQAKYLNGEDIASDDQLEGHFRKYQRRTPKGRQAKCGAGEDDMSDDQLEDHCLKQQTSFSRKRQNKGIDREVKNEISDDQLEDHFQKQQRRFPKSKQNKHTDKEVLDDLAENNSHLLHRTPKKKQAKCMDEDDMNSDDEMEDDQQLRRTLRSKQSKPKTLQQMKQANTLQVKNQASRPLKRGSRILMKSKTPQQTKQSSHLRNKQSSNSQEFSLHMEEEEEGGPSTRLRKRATKGQESEGKLKGKQTKRKKVKNATAAKVSVGHAKMKDGEPEYQCDIDGCTMSFGSKQELLHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGERPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSRQ 1509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00376 1509 MobiDBLite consensus disorder prediction 603 624 - -
Cca03g00376 1509 ProSitePatterns Zinc finger C2H2 type domain signature. 1478 1502 IPR013087 -
Cca03g00376 1509 MobiDBLite consensus disorder prediction 1073 1377 - -
Cca03g00376 1509 MobiDBLite consensus disorder prediction 918 932 - -
Cca03g00376 1509 MobiDBLite consensus disorder prediction 1099 1113 - -
Cca03g00376 1509 MobiDBLite consensus disorder prediction 1306 1331 - -
Cca03g00376 1509 ProSiteProfiles JmjN domain profile. 18 59 IPR003349 -
Cca03g00376 1509 Gene3D Cupin 11 361 - -
Cca03g00376 1509 SMART c2h2final6 1416 1440 IPR013087 -
Cca03g00376 1509 SMART c2h2final6 1393 1415 IPR013087 -
Cca03g00376 1509 SMART c2h2final6 1446 1470 IPR013087 -
Cca03g00376 1509 SMART c2h2final6 1476 1502 IPR013087 -
Cca03g00376 1509 MobiDBLite consensus disorder prediction 1332 1363 - -
Cca03g00376 1509 Pfam jmjN domain 19 52 IPR003349 -
Cca03g00376 1509 Gene3D Classic Zinc Finger 1445 1472 - -
Cca03g00376 1509 Gene3D Classic Zinc Finger 1414 1444 - -
Cca03g00376 1509 SUPERFAMILY Clavaminate synthase-like 185 374 - -
Cca03g00376 1509 MobiDBLite consensus disorder prediction 1274 1296 - -
Cca03g00376 1509 Pfam JmjC domain, hydroxylase 221 339 IPR003347 -
Cca03g00376 1509 Gene3D Classic Zinc Finger 1473 1502 - -
Cca03g00376 1509 SMART JmjN_1 17 58 IPR003349 -
Cca03g00376 1509 MobiDBLite consensus disorder prediction 510 533 - -
Cca03g00376 1509 ProSitePatterns Zinc finger C2H2 type domain signature. 1448 1470 IPR013087 -
Cca03g00376 1509 ProSiteProfiles Zinc finger C2H2 type domain profile. 1416 1445 IPR013087 -
Cca03g00376 1509 MobiDBLite consensus disorder prediction 941 969 - -
Cca03g00376 1509 SMART cupin_9 188 357 IPR003347 -
Cca03g00376 1509 ProSiteProfiles Zinc finger C2H2 type domain profile. 1446 1475 IPR013087 -
Cca03g00376 1509 MobiDBLite consensus disorder prediction 903 988 - -
Cca03g00376 1509 ProSitePatterns Zinc finger C2H2 type domain signature. 1418 1440 IPR013087 -
Cca03g00376 1509 ProSiteProfiles JmjC domain profile. 181 357 IPR003347 -
Cca03g00376 1509 ProSiteProfiles Zinc finger C2H2 type domain profile. 1476 1507 IPR013087 -
Cca03g00376 1509 SUPERFAMILY beta-beta-alpha zinc fingers 1456 1500 IPR036236 -
Cca03g00376 1509 MobiDBLite consensus disorder prediction 1152 1250 - -
Cca03g00376 1509 SUPERFAMILY beta-beta-alpha zinc fingers 1417 1449 IPR036236 -
Cca03g00376 1509 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 6 1499 - -
Cca03g00376 1509 PANTHER LYSINE-SPECIFIC DEMETHYLASE 6 1499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00376 Cca-Chr3 5845173 5854535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00376 1299 1507 C2H2 Transcription Factor Family AT3G48430 55.556 5.67e-68 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca03g00376 JmjC 1.2e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00376 - - cpap:110822963 1565.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00376 03 5845173 5854535 Cca03g00376 03 5845173 5854535 ECH