Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g00375 | ATGGAGCCCTCTGAATCCGAATCAGTTAGTTCCTCCACCAAAGACCCGCAATTGGGTGAACCTTCTTCCCCTGTTCGGCCCCTCGATCACGATCCTCAGCCTCCAGATCTCAATCACGTTACCCAGGTCGATGATGCACTTGCTGGGGAGCTTCAGAACAAGGTGGATTTGAAGGATGGGGATGAGACTGAGAATAAAGGTTCGAACTTGGAAGGTGGGGATGAAAAATTGAGTGATGAAgctgctgctgctgctgcCTCAGAAGATGGTAAGGGAGAAGggtgtgttgatggtggtggtgttgtggttgaagatgatggtggtggaggtggtggtgttgtagttgatgatgatgatggttggaatggtggtgatgaggggtgTGATTGGATTGAGAATGTGAACGAGAGTGATAAGGTGGTTGGAGATGTTGATGGAGTGGAGAACAAGGATGAGAGGAGCAGTGGTAGAGCTCAACAGTACCCCTTGAGGCCAGAGGCTGAAGACTGTTCATTTTATCTCAAAACTGGGACTTGCAAATTTGGATTCAATTGCAAGTTCAATCATCCTCTAAGGAGGAAAAGCCAGGCTAAAAGAGACAATGCGGGAGAAAGAGAAGAACAGGCCGAAAGATCAGGCCAGATGGAATGCAAGTATTATTTAAGGTCTGGGGGGTGTAAGTTCGGAAAGGCTTGTAAGTTTAATCACACAAGAGGAAAGTGTTCAGCATCCCCAATTGCAGAGCTTAACTTCCTTGGCCTGCCTATTCGAATGGGAGAGAAAGAGTGCCCCTATTACATGCGCACAGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACAGGAGGAGGTGATTCTCCTTCCGGTTATGGTAATGGAAGTTCTATTTCATTACAAGGTGTATCACAATCATCTATATCCCCATGGTCTTCTACTAGAGCATTAAATGAATCTGCTCCTTATGTTCCAATGATACTTTCACCTAATCCAGGGGTTTCTCCCCAAAATTCTGAATGGAATGGATATCAGGCACCCGTCTATCTATCTGAAAGGAGCCTGCATCCATCTTCAACATATGTCATGAACAATCCAGCTATGGAAACAAATGTTTATATGCACAATCAAAAACAAATGCAGGTTGAAGAGTATCCAGAAAGGCCTGGTGAACCTGAATGCAGCTATTTCTTAAAAACTGGGGATTGTAAGTTTAAATCTAATTGTAAATTTAACCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTTTACCGTTGAGACCGGACCAAAATGTTTGCACATATTACAGCCGTTACGGACTTTGCAAATTTGGACCAGCTTGTAGGTATGATCACCCAATAAACCCACCACCCTCAACTATGTCGGGACTTGATCAACAATCCTCGTACACAAACTCGGCCAGTGTTGATGTGGCTGAAAATGGAGGTGCCAGTGATGGGAATCAGCTGTCCGTCTAA | 1509 | 0.4082 | MEPSESESVSSSTKDPQLGEPSSPVRPLDHDPQPPDLNHVTQVDDALAGELQNKVDLKDGDETENKGSNLEGGDEKLSDEAAAAAASEDGKGEGCVDGGGVVVEDDGGGGGGVVVDDDDGWNGGDEGCDWIENVNESDKVVGDVDGVENKDERSSGRAQQYPLRPEAEDCSFYLKTGTCKFGFNCKFNHPLRRKSQAKRDNAGEREEQAERSGQMECKYYLRSGGCKFGKACKFNHTRGKCSASPIAELNFLGLPIRMGEKECPYYMRTGSCKFGANCKFNHPDPTGGGDSPSGYGNGSSISLQGVSQSSISPWSSTRALNESAPYVPMILSPNPGVSPQNSEWNGYQAPVYLSERSLHPSSTYVMNNPAMETNVYMHNQKQMQVEEYPERPGEPECSYFLKTGDCKFKSNCKFNHPKNRIARLPPCNLSDKGLPLRPDQNVCTYYSRYGLCKFGPACRYDHPINPPPSTMSGLDQQSSYTNSASVDVAENGGASDGNQLSV | 502 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g00375 | 502 | SUPERFAMILY | CCCH zinc finger | 435 | 463 | IPR036855 | GO:0046872 | |
Cca03g00375 | 502 | SUPERFAMILY | CCCH zinc finger | 396 | 420 | IPR036855 | GO:0046872 | |
Cca03g00375 | 502 | ProSiteProfiles | Zinc finger C3H1-type profile. | 437 | 465 | IPR000571 | GO:0046872 | |
Cca03g00375 | 502 | ProSiteProfiles | Zinc finger C3H1-type profile. | 164 | 192 | IPR000571 | GO:0046872 | |
Cca03g00375 | 502 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 216 | 236 | IPR000571 | GO:0046872 | |
Cca03g00375 | 502 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 168 | 190 | IPR000571 | GO:0046872 | |
Cca03g00375 | 502 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 440 | 463 | IPR000571 | GO:0046872 | |
Cca03g00375 | 502 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 393 | 418 | IPR000571 | GO:0046872 | |
Cca03g00375 | 502 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 259 | 283 | IPR000571 | GO:0046872 | |
Cca03g00375 | 502 | MobiDBLite | consensus disorder prediction | 51 | 82 | - | - | |
Cca03g00375 | 502 | MobiDBLite | consensus disorder prediction | 469 | 502 | - | - | |
Cca03g00375 | 502 | SUPERFAMILY | CCCH zinc finger | 215 | 240 | IPR036855 | GO:0046872 | |
Cca03g00375 | 502 | SUPERFAMILY | CCCH zinc finger | 256 | 284 | IPR036855 | GO:0046872 | |
Cca03g00375 | 502 | SMART | c3hfinal6 | 391 | 418 | IPR000571 | GO:0046872 | |
Cca03g00375 | 502 | SMART | c3hfinal6 | 437 | 464 | IPR000571 | GO:0046872 | |
Cca03g00375 | 502 | SMART | c3hfinal6 | 259 | 284 | IPR000571 | GO:0046872 | |
Cca03g00375 | 502 | SMART | c3hfinal6 | 164 | 191 | IPR000571 | GO:0046872 | |
Cca03g00375 | 502 | SMART | c3hfinal6 | 211 | 238 | IPR000571 | GO:0046872 | |
Cca03g00375 | 502 | ProSiteProfiles | Zinc finger C3H1-type profile. | 211 | 239 | IPR000571 | GO:0046872 | |
Cca03g00375 | 502 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cca03g00375 | 502 | Gene3D | - | 201 | 287 | - | - | |
Cca03g00375 | 502 | ProSiteProfiles | Zinc finger C3H1-type profile. | 391 | 419 | IPR000571 | GO:0046872 | |
Cca03g00375 | 502 | SUPERFAMILY | CCCH zinc finger | 163 | 192 | IPR036855 | GO:0046872 | |
Cca03g00375 | 502 | Gene3D | - | 437 | 490 | - | - | |
Cca03g00375 | 502 | Gene3D | - | 346 | 426 | - | - | |
Cca03g00375 | 502 | Gene3D | - | 129 | 200 | - | - | |
Cca03g00375 | 502 | ProSiteProfiles | Zinc finger C3H1-type profile. | 257 | 285 | IPR000571 | GO:0046872 | |
Cca03g00375 | 502 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 11 | 495 | - | - | |
Cca03g00375 | 502 | MobiDBLite | consensus disorder prediction | 1 | 122 | - | - | |
Cca03g00375 | 502 | MobiDBLite | consensus disorder prediction | 285 | 304 | - | - | |
Cca03g00375 | 502 | PANTHER | PROTEIN PHOSPHATASE RELATED | 11 | 495 | - | - | |
Cca03g00375 | 502 | MobiDBLite | consensus disorder prediction | 468 | 502 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g00375 | Cca-Chr3 | 5823665 | 5829188 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g00375 | 387 | 489 | C2H2 Transcription Factor Family | AT3G02830 | 44.660 | 1.31e-21 | 94.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Cca03g00375 | zf-CCCH | 2.6e-07 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g00375 | - | - | gmx:100776363 | 689.493 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca11g01755 | 11 | 42168932 | 42173144 | Cca03g00375 | 03 | 5823665 | 5829188 | PCT |