Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00375 ATGGAGCCCTCTGAATCCGAATCAGTTAGTTCCTCCACCAAAGACCCGCAATTGGGTGAACCTTCTTCCCCTGTTCGGCCCCTCGATCACGATCCTCAGCCTCCAGATCTCAATCACGTTACCCAGGTCGATGATGCACTTGCTGGGGAGCTTCAGAACAAGGTGGATTTGAAGGATGGGGATGAGACTGAGAATAAAGGTTCGAACTTGGAAGGTGGGGATGAAAAATTGAGTGATGAAgctgctgctgctgctgcCTCAGAAGATGGTAAGGGAGAAGggtgtgttgatggtggtggtgttgtggttgaagatgatggtggtggaggtggtggtgttgtagttgatgatgatgatggttggaatggtggtgatgaggggtgTGATTGGATTGAGAATGTGAACGAGAGTGATAAGGTGGTTGGAGATGTTGATGGAGTGGAGAACAAGGATGAGAGGAGCAGTGGTAGAGCTCAACAGTACCCCTTGAGGCCAGAGGCTGAAGACTGTTCATTTTATCTCAAAACTGGGACTTGCAAATTTGGATTCAATTGCAAGTTCAATCATCCTCTAAGGAGGAAAAGCCAGGCTAAAAGAGACAATGCGGGAGAAAGAGAAGAACAGGCCGAAAGATCAGGCCAGATGGAATGCAAGTATTATTTAAGGTCTGGGGGGTGTAAGTTCGGAAAGGCTTGTAAGTTTAATCACACAAGAGGAAAGTGTTCAGCATCCCCAATTGCAGAGCTTAACTTCCTTGGCCTGCCTATTCGAATGGGAGAGAAAGAGTGCCCCTATTACATGCGCACAGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACAGGAGGAGGTGATTCTCCTTCCGGTTATGGTAATGGAAGTTCTATTTCATTACAAGGTGTATCACAATCATCTATATCCCCATGGTCTTCTACTAGAGCATTAAATGAATCTGCTCCTTATGTTCCAATGATACTTTCACCTAATCCAGGGGTTTCTCCCCAAAATTCTGAATGGAATGGATATCAGGCACCCGTCTATCTATCTGAAAGGAGCCTGCATCCATCTTCAACATATGTCATGAACAATCCAGCTATGGAAACAAATGTTTATATGCACAATCAAAAACAAATGCAGGTTGAAGAGTATCCAGAAAGGCCTGGTGAACCTGAATGCAGCTATTTCTTAAAAACTGGGGATTGTAAGTTTAAATCTAATTGTAAATTTAACCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTTTACCGTTGAGACCGGACCAAAATGTTTGCACATATTACAGCCGTTACGGACTTTGCAAATTTGGACCAGCTTGTAGGTATGATCACCCAATAAACCCACCACCCTCAACTATGTCGGGACTTGATCAACAATCCTCGTACACAAACTCGGCCAGTGTTGATGTGGCTGAAAATGGAGGTGCCAGTGATGGGAATCAGCTGTCCGTCTAA 1509 0.4082 MEPSESESVSSSTKDPQLGEPSSPVRPLDHDPQPPDLNHVTQVDDALAGELQNKVDLKDGDETENKGSNLEGGDEKLSDEAAAAAASEDGKGEGCVDGGGVVVEDDGGGGGGVVVDDDDGWNGGDEGCDWIENVNESDKVVGDVDGVENKDERSSGRAQQYPLRPEAEDCSFYLKTGTCKFGFNCKFNHPLRRKSQAKRDNAGEREEQAERSGQMECKYYLRSGGCKFGKACKFNHTRGKCSASPIAELNFLGLPIRMGEKECPYYMRTGSCKFGANCKFNHPDPTGGGDSPSGYGNGSSISLQGVSQSSISPWSSTRALNESAPYVPMILSPNPGVSPQNSEWNGYQAPVYLSERSLHPSSTYVMNNPAMETNVYMHNQKQMQVEEYPERPGEPECSYFLKTGDCKFKSNCKFNHPKNRIARLPPCNLSDKGLPLRPDQNVCTYYSRYGLCKFGPACRYDHPINPPPSTMSGLDQQSSYTNSASVDVAENGGASDGNQLSV 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00375 502 SUPERFAMILY CCCH zinc finger 435 463 IPR036855 GO:0046872
Cca03g00375 502 SUPERFAMILY CCCH zinc finger 396 420 IPR036855 GO:0046872
Cca03g00375 502 ProSiteProfiles Zinc finger C3H1-type profile. 437 465 IPR000571 GO:0046872
Cca03g00375 502 ProSiteProfiles Zinc finger C3H1-type profile. 164 192 IPR000571 GO:0046872
Cca03g00375 502 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 216 236 IPR000571 GO:0046872
Cca03g00375 502 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 168 190 IPR000571 GO:0046872
Cca03g00375 502 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 440 463 IPR000571 GO:0046872
Cca03g00375 502 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 393 418 IPR000571 GO:0046872
Cca03g00375 502 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 259 283 IPR000571 GO:0046872
Cca03g00375 502 MobiDBLite consensus disorder prediction 51 82 - -
Cca03g00375 502 MobiDBLite consensus disorder prediction 469 502 - -
Cca03g00375 502 SUPERFAMILY CCCH zinc finger 215 240 IPR036855 GO:0046872
Cca03g00375 502 SUPERFAMILY CCCH zinc finger 256 284 IPR036855 GO:0046872
Cca03g00375 502 SMART c3hfinal6 391 418 IPR000571 GO:0046872
Cca03g00375 502 SMART c3hfinal6 437 464 IPR000571 GO:0046872
Cca03g00375 502 SMART c3hfinal6 259 284 IPR000571 GO:0046872
Cca03g00375 502 SMART c3hfinal6 164 191 IPR000571 GO:0046872
Cca03g00375 502 SMART c3hfinal6 211 238 IPR000571 GO:0046872
Cca03g00375 502 ProSiteProfiles Zinc finger C3H1-type profile. 211 239 IPR000571 GO:0046872
Cca03g00375 502 MobiDBLite consensus disorder prediction 1 19 - -
Cca03g00375 502 Gene3D - 201 287 - -
Cca03g00375 502 ProSiteProfiles Zinc finger C3H1-type profile. 391 419 IPR000571 GO:0046872
Cca03g00375 502 SUPERFAMILY CCCH zinc finger 163 192 IPR036855 GO:0046872
Cca03g00375 502 Gene3D - 437 490 - -
Cca03g00375 502 Gene3D - 346 426 - -
Cca03g00375 502 Gene3D - 129 200 - -
Cca03g00375 502 ProSiteProfiles Zinc finger C3H1-type profile. 257 285 IPR000571 GO:0046872
Cca03g00375 502 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 11 495 - -
Cca03g00375 502 MobiDBLite consensus disorder prediction 1 122 - -
Cca03g00375 502 MobiDBLite consensus disorder prediction 285 304 - -
Cca03g00375 502 PANTHER PROTEIN PHOSPHATASE RELATED 11 495 - -
Cca03g00375 502 MobiDBLite consensus disorder prediction 468 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00375 Cca-Chr3 5823665 5829188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00375 387 489 C2H2 Transcription Factor Family AT3G02830 44.660 1.31e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca03g00375 zf-CCCH 2.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00375 - - gmx:100776363 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01755 11 42168932 42173144 Cca03g00375 03 5823665 5829188 PCT