Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00366 ATGGGTAGCAAGGGACACCCAGTTTGTGCAGTCTGCACCAACAACTGTCTATTGTTCCACCGACCAAAACAAACACCACCTTCACCAACCTGTTTCTTCAAGGTCATCGCTAAACAAGAGCATTTAACTACTTTGTATATTCCTCCTGCCTTTAGTAGTATTGTGTCACACTTGGTTAATAAGAAAGTCATTCTCAATGATTCAAGTGGGAAGCAATGGAATGTAGAAGTATCAGAAGTTAATGGTTCTTTTGTGTTTGAGGAAGGATGGAATACTTTTTCATTGGATCATGGGCTTAAAGTTGGATATTTTCTAGTATTCAATTACATAAAGGATTTGCACTTTGATGTCAAGATCTATGATACATCTGCATGTGAAAAGCTTGATTTTTCTAAAAAAAGAAATCAGAAGAAAAGAAGTAGGGGCAAAAGTGGCTCTCCAGTAAAAGATGGTAAGTTGGTTAGACAAGGTCCCAATGCCGTAGTTGTCTCCCAGCTTCATGTGCCAAAAATGCAAAACCAGCGCAGCAAGGTTGACTCAGTAGTACCACAAAATAGTAAAGAGAGTGGCCAACTTATGTGCATATCAGAACACTGTGAAGACCCATATTATTCAACAAGTCTAGAATTTGATCAGAGCCATGGTGTTGATGGGACTACGAGATTTGCAAACGGAGATTCAAAAGTTCCTGATGTTGATTGTGGAACCCATATATATCAAAATGATGCAATCGTATGTAGTAAGAACCCTATGTTTGAAGTGGGCATGGGAGCTTACTTAGACATATCTGAACTTGAAATGTCAGGAGGAAATACTTCCCTAGGTGAGGCAAACAAAAGCACCTATGACAAGACTTCTACTTTGGAACTTGAAGCAAACAAAGGGATCAAAGCCATCATGTACAACAGGGAAGCTCAAGAGTGTCAAATTGCCGAGAGCTTAGGTGAAATGAAGAAAGTTCCTGTGGACATGGCTCCCGAGTTGGGCAGTTCCATGGATGAATTGAATGTAACAGGTGAAATCTCTGAAAAGTCCAAGAAAGAGCCTGTAACTCTCGATGAATTGGGAGTAACAGGGTTGCCAGAGGAGACTAAGGGAGAGTTGGGTCACAGTTCTGACATGTTTAATCAACATAATGAGAGTCACTTCAAAACTGCACTCACTTTCTCCTGCGTGGTGCCTAATGATGATGTTTACCTTGAATTGGCCAGATGCCTACATGTGATTCGCGGGATAAAAGAGTCTCGGCAAAAGAAGATGGTAGTGTTACTTCGGGATCCACTGAGGAGATTGTGGCCAGTGTTTTACAATGAGAAACTGCTGTTACTGACTCATGGATGGTTAAATTTTAGCAGAGCTAATAAGATTGAACCAAATGATGTGTGCACGTTTGAGGCTGAGGCTGAAGCTGAGGACAAGTATAAACGAATCTTAACTGTACATATAGCCCACAAGAGATGTTAG 1464 0.4085 MGSKGHPVCAVCTNNCLLFHRPKQTPPSPTCFFKVIAKQEHLTTLYIPPAFSSIVSHLVNKKVILNDSSGKQWNVEVSEVNGSFVFEEGWNTFSLDHGLKVGYFLVFNYIKDLHFDVKIYDTSACEKLDFSKKRNQKKRSRGKSGSPVKDGKLVRQGPNAVVVSQLHVPKMQNQRSKVDSVVPQNSKESGQLMCISEHCEDPYYSTSLEFDQSHGVDGTTRFANGDSKVPDVDCGTHIYQNDAIVCSKNPMFEVGMGAYLDISELEMSGGNTSLGEANKSTYDKTSTLELEANKGIKAIMYNREAQECQIAESLGEMKKVPVDMAPELGSSMDELNVTGEISEKSKKEPVTLDELGVTGLPEETKGELGHSSDMFNQHNESHFKTALTFSCVVPNDDVYLELARCLHVIRGIKESRQKKMVVLLRDPLRRLWPVFYNEKLLLLTHGWLNFSRANKIEPNDVCTFEAEAEAEDKYKRILTVHIAHKRC 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00366 487 ProSiteProfiles B3 DNA-binding domain profile. 30 123 IPR003340 GO:0003677
Cca03g00366 487 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 9 482 IPR044837 -
Cca03g00366 487 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0905400-LIKE ISOFORM X1 9 482 - -
Cca03g00366 487 Gene3D - 362 486 IPR015300 -
Cca03g00366 487 CDD B3_DNA 31 121 IPR003340 GO:0003677
Cca03g00366 487 Gene3D - 27 125 IPR015300 -
Cca03g00366 487 Pfam B3 DNA binding domain 32 121 IPR003340 GO:0003677
Cca03g00366 487 Pfam B3 DNA binding domain 413 471 IPR003340 GO:0003677
Cca03g00366 487 SUPERFAMILY DNA-binding pseudobarrel domain 27 125 IPR015300 -
Cca03g00366 487 SUPERFAMILY DNA-binding pseudobarrel domain 381 470 IPR015300 -
Cca03g00366 487 CDD B3_DNA 382 482 IPR003340 GO:0003677
Cca03g00366 487 ProSiteProfiles B3 DNA-binding domain profile. 383 486 IPR003340 GO:0003677
Cca03g00366 487 SMART B3_2 383 477 IPR003340 GO:0003677
Cca03g00366 487 SMART B3_2 32 123 IPR003340 GO:0003677
Cca03g00366 487 MobiDBLite consensus disorder prediction 134 153 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00366 32 127 B3 DNA Binding Superfamily AT5G66980 36.000 8.55e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca03g00366 B3 3e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00366 - - ccaj:109789322 996.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00366 03 5632568 5636621 Cca03g00366 03 5632568 5636621 ECH