Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00345 ATGGGGTTTTATGACTTGGTTTTGCTATTATGTTCAGCTTGGTGTATCTTTTATGTGGGTAGTTGCAGTGCTCAGTTACAATCCTCTCAGACCCAAGTGCTTCTCCAGTTGAAAAAGCACTTGGAGTACCCAAAACAATTGGAAATTTGGAGGGATCGTTGGACAGATCTTTGCTCTATTTCCTCTTCTGCACAAGTGAATGTCACGTGCCAGGACAATTTTGTCACTGAGCTCACCATCTTGGGTGATAAGCCAACAAAGGGTAGAGATTTTGATGGGTTTGCCATTCCAAATCAAACACTATCACAAGGCTTCTCCATGGACTCTTTTGTGGCTACTCTTGCAAGGTTAACTAGCCTGAGAGTCCTTTCTCTTGTCTCTTTGGGCATGTGGGGACCACTCCCTGATAGAATTCACAGACTTCATGTACTTGAACATTTGAACTTGAGTTCCAATTATCTCTATGGATCAATCCCTCCAAAGATTTGCACGATGGTAAACCTTCAAATTCTTGGACTGGGTGATAACTTCTTCAATGGTACCATCCCAAGCTTGTTCAATTCGTCAAGCAATCTCACAGTTGTTAGTTTGAAGAATAACAAATTAAAGGGTCCATTTCCACCTTCAATCCTTAGTGTCACCACTTTAACTGAGATTGACATGTCAAGCAATCAAATATCAGGGAGCTTGCAAGATTTTAGTGTTTTGAGTAGTTTGGAACATCTAGATTTAGGGGAAAACAGATTAGAGTCTGAACTACCTGCAATGCCAAAAGGGTTGATGAGGCTTTTCCTCAGCAGAAACTCCTTCTCAGGTGAAATTCCCAAGCACTATGGTCAACTAAATAGGCTTCAGAAGCTTGATGTTTCCTTCAATGCACTCACAGGCACTGCTCCTGCTGCACTTTTTTCTTTGCCAAACATCAGTTACTTGAATTTGGCATCCAACATGCTGAATGGACCACTCCAAAGTCACCTAAGATGTAGCAGCCTACTTAGATTTGTTGACATATCATATAATAGGTTTGTGGGGGGCTTGCCTTCTTCACTGAGCACTGAATCAGAAAACAGAGTGGTTAAGAGTGATGGAAACTGTTTATCTGGAAGTCTGCAGCATCAGCATGCAGTATCTTATTGCACAGAAGTCCATGTGAAGAAGAAATCATACAGAGTTGGAATTTTTGTTGGGGTCATTGTGGGAATTCTTGCGATCGTTGTGGTTTTGGGTCTGATCATTGTTATAACTTGTAAGAGGTGTTTCCCTAGGGGGATGTCAGAGCAGCACCTATTGCATAAAACAGTTCAAGATAGCTATCCAGCAGGGTTCTCCTCTGAGTTTGTCACAAATGCAAGGTATGTTTCTGAAGCTGCAAAGATAGGCAGGGATGACCTTCCCATGTGCCGGTCATATTCCTTGGAAGAGCTAAAGGAAGCCACCAATAACTTTGACAACTCTACTTTTATGGGTGAAAATACATATGGGAAGCTTTACAAAGGAAAACTGGAGAGTGGGATACTGGTTGTAATAAGGTGTTTACCTTTGTCCAAAAAGTATTCAATTAGGAATTTCAAACTGAGGTTGGATTTGCTTGCAAAGCTGCGTCACCCGCATTTGGTATCTCTCTTAGGGCACTGCATTGATGGTGTTGTAGGAGAGCATAATGAGACAAATGTCTTTCTCATTTATGAATATGTGTCAAATGGGACTTTTCAGACTTATATCTCTGGAGAAAGTCCTGGCAAGGTTTTCAATTGGTCAGAGAGATTATCAGCACTAATTAACATTGCTAAGGCTGTTCACTTCCTACACTCTGGCATGATACCTGGTTTCTTCAAAAATCGACTTAAGAGCAACAATATCTTGTTGAATGAGAATTGGATGGCAAAGTTGAGTGACTATGGATTGTCCATTATATCAGAAGAAGCTGATGCATGTGAGGTAAAAGGAGAAAGTCCTAATTCATGGCATCTTTCAATAGTGAGGATGGCTGGAAACAGGTAG 2001 0.4118 MGFYDLVLLLCSAWCIFYVGSCSAQLQSSQTQVLLQLKKHLEYPKQLEIWRDRWTDLCSISSSAQVNVTCQDNFVTELTILGDKPTKGRDFDGFAIPNQTLSQGFSMDSFVATLARLTSLRVLSLVSLGMWGPLPDRIHRLHVLEHLNLSSNYLYGSIPPKICTMVNLQILGLGDNFFNGTIPSLFNSSSNLTVVSLKNNKLKGPFPPSILSVTTLTEIDMSSNQISGSLQDFSVLSSLEHLDLGENRLESELPAMPKGLMRLFLSRNSFSGEIPKHYGQLNRLQKLDVSFNALTGTAPAALFSLPNISYLNLASNMLNGPLQSHLRCSSLLRFVDISYNRFVGGLPSSLSTESENRVVKSDGNCLSGSLQHQHAVSYCTEVHVKKKSYRVGIFVGVIVGILAIVVVLGLIIVITCKRCFPRGMSEQHLLHKTVQDSYPAGFSSEFVTNARYVSEAAKIGRDDLPMCRSYSLEELKEATNNFDNSTFMGENTYGKLYKGKLESGILVVIRCLPLSKKYSIRNFKLRLDLLAKLRHPHLVSLLGHCIDGVVGEHNETNVFLIYEYVSNGTFQTYISGESPGKVFNWSERLSALINIAKAVHFLHSGMIPGFFKNRLKSNNILLNENWMAKLSDYGLSIISEEADACEVKGESPNSWHLSIVRMAGNR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00345 666 Gene3D Ribonuclease Inhibitor 27 259 IPR032675 -
Cca03g00345 666 PANTHER BNAA09G06560D PROTEIN 4 655 - -
Cca03g00345 666 PANTHER OS07G0166700 PROTEIN 4 655 IPR045272 GO:0004714|GO:0006468
Cca03g00345 666 Gene3D Transferase(Phosphotransferase) domain 1 565 656 - -
Cca03g00345 666 SUPERFAMILY Protein kinase-like (PK-like) 466 642 IPR011009 -
Cca03g00345 666 Gene3D Ribonuclease Inhibitor 260 394 IPR032675 -
Cca03g00345 666 ProSiteProfiles Protein kinase domain profile. 482 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00345 666 Gene3D Phosphorylase Kinase; domain 1 447 564 - -
Cca03g00345 666 Pfam Protein tyrosine and serine/threonine kinase 487 655 IPR001245 GO:0004672|GO:0006468
Cca03g00345 666 SMART LRR_typ_2 141 165 IPR003591 -
Cca03g00345 666 SMART LRR_typ_2 236 259 IPR003591 -
Cca03g00345 666 SMART LRR_typ_2 281 304 IPR003591 -
Cca03g00345 666 Pfam Leucine rich repeat 283 342 IPR001611 GO:0005515
Cca03g00345 666 SUPERFAMILY L domain-like 29 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00345 Cca-Chr3 5335411 5340691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00345 9 654 Miscellaneous Gene Families AT5G14210 50.760 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Cca03g00345 PK_Tyr_Ser-Thr 1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00345 - - gmx:100802978 1105.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00345 03 5335411 5340691 Cca03g00345 03 5335411 5340691 ECH