Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00342 ATGGCCGctctcacctctctctccctctctctccgccctctctctctcCGCCTCAAGCCAACCGCGACCCTCTCCGCCGCACTCCCAGGTAAACCGAACTCCGAACTCACGCTATTTTCGCTTTTAGGTCACGGCATTCGCGTAATGTGTATGTCTCCGCTGTGTGCGTGTCCAGGAAGCACCGATGGAGCCAAAACCAAAGCGCCGCGGAGAAGAGCGGGGCGAATAGAAGGACCTAGAAAGAGCATGGAGGACTCCGTTCAGCGCAAGATGGAGCAGTTCTACGAAGGCTCCGACGGGCCTCCGCTTCGCGTTCTCCCTATCGGCGGTTTGGGGGAGATTGGGATGAATTGCATGCTCGTCGGGAACCATGACCGTTATATCCTCATTGACGCTGGTGTCATGTTTCCAGACTATGATGAACTTGGAGTTCAGAAGATTATACCTGATACGACTTTTATAAGGAAGTGGAGCCACAAGATTGAAGCTCTCGTCATAACACATGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATCCCAGCATTGGATTCCAATACACCAATTTTTGCATCATCCTTTACAATGGAGCTTATTAGAAAACGTTTGAAGGAACATGGTATTTTTGTTCCATCTAGGCTCAAAGTATTTAGAACCAGGAAAAAGTTTGTGGCTGGGCCATTTGAGATAGAACCTATAAGGGTGACCCATTCCATTCCTGATTGTTGTGGACTAGTTCTTCGTTGTTCTGATGGTACAATTCTTCACACTGGGGACTGGAAGATTGATGAGACACCACTAGATGGGAAAGTTTTTGATCGTGAAGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCAACAAATATACTCTCACCTGGTAGGACAACCAGTGAATCTGTTGTAGCAGATGCATTATTGAGACATATTTCAGCTTCTAAAGGAAGGGTCATTACTACTCAATTTGCGTCAAATTTACATCGGCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACGTATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTGCTAATTGTAACCACAGGTTCTCAAGCAGAACCACGTGCTGCCTTGAACCTTGCATCTTACGGAAGTAGTCATGCTTTCAAACTAACCAAGGAAGATGTCGTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGGAAATGCTAAACCGCATATCAGAGATTGGATCAACGATAGTTATGGGAAAAAATGAAAATCTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAAGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTTCCCATCCATGGAGAGCTTTTGTTCCTGAAGGAACATGAGTTACTTGGAAAATCAACTGGAATTCGGCACACTGCTGTTATTAAGAATGGGGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGAATCCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGCGATAGAGCATTTGGTACATCTAGTGAACTCTTCATTGATGAAAGATTGAGAATCGCATTAGATGGCATCATTGTCATTAGCATGGAAATATTTCGCCCTAAAATTTTAGATAGTTTGACTGAGAACACGTTAAAAGGGAAGATAAGGATTACCACAAGATGCTTATGGCTTGATAAAGGGAAGCTGATGGATGCACTCTACAAAGCTGCCCGTGCAGCTCTTTCAAGCTGCCCTGTAAAGAGTCCACTGGCTCACATCGAAAGAACTGTGTCTGAGGTATTGAGGAAGATGGTGAGGAAATACAGTGGTAAACGACCTGAAGTTATTGCCATTGCCATAGAAAACCCTTCAGGCATTCTTGCTGATGAGATGAACACAAAATTGTCTGGCAAAAAAGCCCATGTGGGTCTTGGAATATCATCAGTAAGAAAAGCAGTGGATGAGCATGAGAAGGGAAATCCGTCCACCACACTGCAAGCTAGAGATGATAGTATTGATAATGCAAGTGTAGCTGAGCGTGATTTATCTGAGGGAGACAACTCTGCAAGTGGAGCTGAGGGTGATTTATCTCAGTCAGAGGAATCAGAAGAATTTTGGAAACCATTCGTTACATCGTTGCCAATTGAGGAGTCAATTGGTGCTGACAGTGGTTATGTTTCACAAAAGGAGCATAAATCCAATTTGAAGAAAGATGATTCTAAAGACATGGATGAAGCCAAGTATGAAGAAACATGTAATTCTGAACCCAAGTCTTCAAAATCAGTAAAGAGAAACAAATGGAAAACTGAAGAAATTAAGAAGCTGATTGGTATGCGTGGGGAACTACGTGACAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGAAGAGATATCTCAAAAATTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAATGCAAATCTCTGTGGACATCTTTGGCACTGAAATATGAGGGGATCAAGAAAGAGAAGGATGGTGAGAAAAGTTGGCAGTATTTTGAGGACATGGAAAGGATAATGTCTGATAAAGAAATCCCTGCAGCAAAATGA 2697 0.4227 MAALTSLSLSLRPLSLRLKPTATLSAALPGKPNSELTLFSLLGHGIRVMCMSPLCACPGSTDGAKTKAPRRRAGRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFASSFTMELIRKRLKEHGIFVPSRLKVFRTRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNILSPGRTTSESVVADALLRHISASKGRVITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDVVLYSAKVIPGNESRVMEMLNRISEIGSTIVMGKNENLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRILSNGFISLGKENLQLKYSDGDRAFGTSSELFIDERLRIALDGIIVISMEIFRPKILDSLTENTLKGKIRITTRCLWLDKGKLMDALYKAARAALSSCPVKSPLAHIERTVSEVLRKMVRKYSGKRPEVIAIAIENPSGILADEMNTKLSGKKAHVGLGISSVRKAVDEHEKGNPSTTLQARDDSIDNASVAERDLSEGDNSASGAEGDLSQSEESEEFWKPFVTSLPIEESIGADSGYVSQKEHKSNLKKDDSKDMDEAKYEETCNSEPKSSKSVKRNKWKTEEIKKLIGMRGELRDRFQVVKGRMALWEEISQKLLADGISRSPGQCKSLWTSLALKYEGIKKEKDGEKSWQYFEDMERIMSDKEIPAAK 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00342 898 Pfam Myb/SANT-like DNA-binding domain 804 888 IPR044822 -
Cca03g00342 898 MobiDBLite consensus disorder prediction 761 802 - -
Cca03g00342 898 PANTHER RIBONUCLEASE J 56 893 - -
Cca03g00342 898 Gene3D - 107 519 IPR036866 -
Cca03g00342 898 MobiDBLite consensus disorder prediction 691 743 - -
Cca03g00342 898 CDD GT1 805 870 - -
Cca03g00342 898 CDD RNaseJ_MBL-fold 106 517 - -
Cca03g00342 898 ProSiteProfiles Myb-like domain profile. 799 863 IPR001005 -
Cca03g00342 898 Pfam Beta-lactamase superfamily domain 126 262 IPR001279 -
Cca03g00342 898 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 456 497 IPR011108 -
Cca03g00342 898 MobiDBLite consensus disorder prediction 61 86 - -
Cca03g00342 898 Coils Coil 897 898 - -
Cca03g00342 898 SUPERFAMILY Metallo-hydrolase/oxidoreductase 103 517 IPR036866 -
Cca03g00342 898 MobiDBLite consensus disorder prediction 65 86 - -
Cca03g00342 898 SMART Lactamase_B_5a 115 312 IPR001279 -
Cca03g00342 898 Gene3D - 807 867 - -
Cca03g00342 898 MobiDBLite consensus disorder prediction 769 802 - -
Cca03g00342 898 Gene3D - 304 454 IPR042173 -
Cca03g00342 898 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 56 893 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00342 Cca-Chr3 5307550 5316141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00342 806 892 Trihelix Transcription Factor Family AT2G38250 34.831 1.05e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca03g00342 Lactamase_B_2 1e-09 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00342 - - gmx:100783850 1527.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00342 03 5307550 5316141 Cca03g00342 03 5307550 5316141 ECH
Cca11g01735 11 41927656 41937056 Cca03g00342 03 5307550 5316141 PCT