Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00337 ATGGCAGTCACATTCTACGACCCTAGCTCTGCCTCTGGGTTGAAGAAGCTCGATGAGTACCTTCTCCCACGCAGTTATATCACTGGGTACCAAGCTTCAAAGGATGATCTTACCGTGTACGCTGCTTTGCCAAATGCCCCATCGGATGAGTATGTGAATGTATCCAGGTGGTACAAACACATTGATGCTTTGTTGAGAATCTCTGGTGTTTCTGGCGAGGGATCTGGTGTTACCATCGAGGGATCTCTTGTTGCGGAGCCTGTTGCAACTCCTCCTGCTGCTGACACGAAGGCAAGTGCTGCTGCAGCTGAGGATGACGATGATGACGATGTGGATTTGTTTGGTGAAGAGACAGAGGAAGAGAAGAAGGCAGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGGAAAGAAGAAAGAGACGAATGAATTGAATGGCATTGATTTTTTTCTGATTCCATTCTCAGCTGGGAAATCATCTGTTTTGTTGGATGTGAAACCATGGGATGATGAAACCGACATGAAGAAGCTTGAAGAAGCAGTGAGATCTGTTGAGATGGAAGGGCTGCTTTGGGGTGCATCCAAACTTGTTCCTGTTGGAGTTGTGACATTGTGGCCTTCAATAAAATTTAATCTACCATCGTGGGCTTTTGGAGATCATGGCAACGGGAGGCTTTGCAAGATTTTGAAATTATGTTCCAGTGAAACTATCCTGAATTGGGAATTTTTGTTTTTAGAAACATGCTTGTTTTTATGTCTGTCTTTGTGA 768 0.4531 MAVTFYDPSSASGLKKLDEYLLPRSYITGYQASKDDLTVYAALPNAPSDEYVNVSRWYKHIDALLRISGVSGEGSGVTIEGSLVAEPVATPPAADTKASAAAAEDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKETNELNGIDFFLIPFSAGKSSVLLDVKPWDDETDMKKLEEAVRSVEMEGLLWGASKLVPVGVVTLWPSIKFNLPSWAFGDHGNGRLCKILKLCSSETILNWEFLFLETCLFLCLSL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00337 255 Gene3D - 3 76 - -
Cca03g00337 255 SUPERFAMILY eEF-1beta-like 157 200 IPR036219 -
Cca03g00337 255 CDD EF1B 156 200 IPR014038 GO:0003746|GO:0006414
Cca03g00337 255 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 200 - -
Cca03g00337 255 Pfam EF-1 guanine nucleotide exchange domain 160 200 IPR014038 GO:0003746|GO:0006414
Cca03g00337 255 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 107 115 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cca03g00337 255 Gene3D - 154 209 IPR014717 -
Cca03g00337 255 MobiDBLite consensus disorder prediction 88 111 - -
Cca03g00337 255 PANTHER ELONGATION FACTOR 1-DELTA 1-RELATED 1 200 - -
Cca03g00337 255 SMART EF1_GNE_2 158 243 IPR014038 GO:0003746|GO:0006414
Cca03g00337 255 Coils Coil 115 135 - -
Cca03g00337 255 SUPERFAMILY GST C-terminal domain-like 12 67 IPR036282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00337 Cca-Chr3 5255570 5257308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00337 5 200 Eukaryotic Initiation Factors Gene Family AT2G18110 71.212 1.46e-72 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00337 K03232 - gmx:100777627 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00337 03 5255570 5257308 Cca03g00337 03 5255570 5257308 ECH