Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00323 ATGGAGAACAACcagcagcagcagcagcagcagcagcagcaAGGAGGTCAAGGTCAAGGGCAAGGGCAATCGGGTGGGGCGTACCCAGGAGCAGGAGGGGCTCCACCCTTCcagcacctcctgcagcagcagcagcagcagctgcagATGTTCTGGTCCTACCAGAGGCAAGAGATCGAGCACGTTAACGACTTCAAGAACCACCAGCTCCCCCTCGCCCGCATCAAGAAGATCATGAAGGCCGACGAGGACGTCCGCATGATCTCCGCCGAGGCTCCCATCCTCTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACCATCCGCTCCTGGCTCCACGCCGAGGAGAACAAGCGCCGCACTCTCCAGAAGAACGACATCGCCGCCGCCATCACCCGCACCGACATCTTCGACTTCCTCGTCGACATCGTCCCCCGCGACGAGATCAAGGACGACGCCGCCCTCGTCGGCGCCACCGCCAGCGGCGTCCCCTACTACTACCCTCCCATTGGCCAGCCCGCCGGCATGATGATCGGCCGCCCCGCCGTCGATCCCGCCACCGGCGTCTACGTCCAGCCCCCCTCCCAGGCCTGGCAGTCCGTCTGGCAGTCCGCCGCCGAAGACGCCTCCTACGCCACCGGCCCCGCCCAGGGTAATCTCGATGGCCAGAGCTGA 678 0.5914 MENNQQQQQQQQQQGGQGQGQGQSGGAYPGAGGAPPFQHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDDAALVGATASGVPYYYPPIGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQSAAEDASYATGPAQGNLDGQS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00323 225 MobiDBLite consensus disorder prediction 1 24 - -
Cca03g00323 225 Gene3D Histone, subunit A 36 147 IPR009072 GO:0046982
Cca03g00323 225 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 225 - -
Cca03g00323 225 Pfam Core histone H2A/H2B/H3/H4 54 132 IPR007125 GO:0003677
Cca03g00323 225 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 1 225 - -
Cca03g00323 225 SUPERFAMILY Histone-fold 21 141 IPR009072 GO:0046982
Cca03g00323 225 MobiDBLite consensus disorder prediction 1 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00323 Cca-Chr3 5068386 5075382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00323 31 207 CCAAT-HAP5 Transcription Factor Family AT3G48590 84.946 2.34e-104 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Cca03g00323 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00323 - - gmx:100818447 363.614