Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00322 ATGGAATGTAATAAAGATGACGCCTCAAGGGCTAAAGAACTTGCAGGGAAGATGCTTTTACAGAAGGATTTTGATGGGGCAAGAAGGCTTGCAATGAAGGCTCTACAGTTATATCCCAAACTTGATGGCCTTGCTCAATTGCTAACAACTATTGAGGTGTATATCTCTGCTGAAAAAAAAGTTGATGGAGAATTTGATTGGTACAGGATCCTTGGTGTGCAACCCTTGGCTAATGAGGAAACAATTCGAAGACGATATAGGAAACTGGCTCTTACTCTGCACCCTGATAAAAATAAATCCGTAGGTGCAGATGGGGCATTTAACCTTATCTCACAGGCTTGGAGTTATTTATCTGATAAGGCCAAGAGAATCTCCTATGACCAAAAGTACAATTCATTGGGTATATATCGTGGAAATCATGGTGGTATTCCTTCTGTACCAGCTAGTCAGAATGGTGTATATAATAATAATGTCTTCAATCCTGTGATGTTGAAATCCACATTTTGGACTGTGTGCACTTTCTGCCAGACAAAGTTTGAGTACCATAATGTTTATATTAACTGCAATCTTGTCTGTACCTGCTGTCATAAGCCATTTGTGGCTTCTGAGACATTGCCTCCACCTGGACACAGAAATATTACATCCACTTCAAGAATTTCTCAGATGAAGCAACATAACTTCAACTGTACCAGAATGGAAAGCAATCATGTTTCAGGAAGGACACCAACGTCTGCTGTCAATTCATCCCTTGGGTCAGGTCCTTTCTCTATGCCTGACAATATTTCCCGTGTACCGACATCAGCTTCTTGTGTTGCAGAAGCTCCTGGTGTTTTTAGGATGTCATCTGAGAATTTGAAGAGAAGGCGTGAAGATTCAACACCTGTCTTGAGGGATGATGTCCATTTTGGGAAAACTCATACTGCTGAGAGAACTGGTGCTGGTTCAGCTTTTCAGTTCTGTAGTTTTGGTTCAAATTCTTTTGTGAAAGGAGAAAGGCCAAGGATAATAAGGCCCATTGATGAACATAAAGTCAGAAGTGATGGTAGGGATTTGGAAAACAAAGCAGCCTCTCAAAATGAAGGAATAAACTTGGCTAATGGATTTGGGTCTCAAAAGAATAGTTTTGATACAGGAAGGGTTAATGCTGCCGGAAATTACAAACGCAATGGTGTTAGGGACGTATCACAGCTTCAACTAAGGAGCATATTGGTGGAAAAGGCACGGAAGGAGATTCTTAAAAAGCTTGATGAATGGAGTGCTTCTTCTGCATCAAAGAATTTAGACAAGTCAAAGAAAACTGACACAGACATCAAAGAGAAGAAGGGCAAAGAAAGGGCAATAACTGGTGTAAAACCTGGTCCTCAAGAATTTGTTGATTCTGAGACTGTCAGCAAGAAGTGTTTCTCTGCTGATCCAGAGCCAGAGCTGCCTGGTTCTCTCTCAATGAATGTTCCAGACCCAGATTTCCATGATTTTGATGGAGACCGCATTGAAAATGCTTTTGGCGAGAACCAGGTGTGGGCTGCTTATGATAATGATGATGGCATGCCACGCTATTATTGCTTAATTCATGAAGTAATCTCGAAGAACCCTTTCAACATGAGGATCAGCTGGCTGAATGCCAAAAGCAATGATGAATTGGCCCCTATAAAGTGGATCAGTTCTGGCTTTCCCAAGACCAGCGGAGATTTCAGAATAGGAAAGCGTGTATCCTATAGCACTCTTAATTCCTTCTCACACAGGGTTAAGTGGACAAAAGGTTCAAGGGGAGTTGTCCATATATATCCAAAGAAAGGCGACGTATGGGCTCTGTATCGAAACTGGTCCCTTGACTGGACTGAATTCACTGATGATGAAATCATACAGAAATATGACATGGTAGAGGTGCTTGAAGACTACATTGAAGACCAAGGTGTGAATGTTGCCCCACTTGTCAAGGTTGCTGGTTTCAAGACTGTCTTTCGCCAGAATGTCGATCCAAGAAAAGTCAGGAACATTTCAAAGGTGGAGATGTTTCGTTTCTCACACCAGGTACCTTCTTACTTGCTTACTGGTGAAGAGGGTCACAATGCTCCTAAAGGTTGCTTGGAGCTTGATCCTGCTGCTACACCCATGGAACTTCTTCAGGTGTTTGCCGAAGATCTGGAGCAAGAAATTGTTATGCCAACTGAAAAGCCGGTGGAAGATGAATTGAAGCAGAAAGAGAATTCCGGGGAGGATGGTTTGGTTGATAAGGGAGAAGGTTCTGATGAAGGAATGGGAGAGAAGAGAAGAAAGCCTGAGATTTTGTTTGTATATAAGCGGAGACGTCTAGGGAAAAAGAAAGAGCTGGGAAGTGGAAAGTAA 2346 0.4211 MECNKDDASRAKELAGKMLLQKDFDGARRLAMKALQLYPKLDGLAQLLTTIEVYISAEKKVDGEFDWYRILGVQPLANEETIRRRYRKLALTLHPDKNKSVGADGAFNLISQAWSYLSDKAKRISYDQKYNSLGIYRGNHGGIPSVPASQNGVYNNNVFNPVMLKSTFWTVCTFCQTKFEYHNVYINCNLVCTCCHKPFVASETLPPPGHRNITSTSRISQMKQHNFNCTRMESNHVSGRTPTSAVNSSLGSGPFSMPDNISRVPTSASCVAEAPGVFRMSSENLKRRREDSTPVLRDDVHFGKTHTAERTGAGSAFQFCSFGSNSFVKGERPRIIRPIDEHKVRSDGRDLENKAASQNEGINLANGFGSQKNSFDTGRVNAAGNYKRNGVRDVSQLQLRSILVEKARKEILKKLDEWSASSASKNLDKSKKTDTDIKEKKGKERAITGVKPGPQEFVDSETVSKKCFSADPEPELPGSLSMNVPDPDFHDFDGDRIENAFGENQVWAAYDNDDGMPRYYCLIHEVISKNPFNMRISWLNAKSNDELAPIKWISSGFPKTSGDFRIGKRVSYSTLNSFSHRVKWTKGSRGVVHIYPKKGDVWALYRNWSLDWTEFTDDEIIQKYDMVEVLEDYIEDQGVNVAPLVKVAGFKTVFRQNVDPRKVRNISKVEMFRFSHQVPSYLLTGEEGHNAPKGCLELDPAATPMELLQVFAEDLEQEIVMPTEKPVEDELKQKENSGEDGLVDKGEGSDEGMGEKRRKPEILFVYKRRRLGKKKELGSGK 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00322 781 PRINTS DnaJ domain signature 68 86 IPR001623 -
Cca03g00322 781 PRINTS DnaJ domain signature 86 101 IPR001623 -
Cca03g00322 781 PRINTS DnaJ domain signature 102 122 IPR001623 -
Cca03g00322 781 PANTHER HEAT SHOCK PROTEIN-LIKE 1 731 - -
Cca03g00322 781 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Cca03g00322 781 MobiDBLite consensus disorder prediction 724 757 - -
Cca03g00322 781 PANTHER BNAC03G44070D PROTEIN 1 731 - -
Cca03g00322 781 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Cca03g00322 781 Pfam Domain of unknown function (DUF3444) 481 687 IPR024593 -
Cca03g00322 781 SMART dnaj_3 65 122 IPR001623 -
Cca03g00322 781 CDD DnaJ 66 119 IPR001623 -
Cca03g00322 781 MobiDBLite consensus disorder prediction 423 443 - -
Cca03g00322 781 Gene3D DnaJ domain 54 137 IPR036869 -
Cca03g00322 781 MobiDBLite consensus disorder prediction 427 443 - -
Cca03g00322 781 SUPERFAMILY Chaperone J-domain 64 147 IPR036869 -
Cca03g00322 781 Pfam DnaJ domain 66 127 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00322 Cca-Chr3 5054254 5056599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00322 4 207 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.075 3.77e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00322 - - gmx:100797672 1219.14