Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00315 ATGGAGGATCAGCAAAACAGGTTTGGAGTTTATAGAATGAAGGGGGAGTTTTCAGTTGACTTGAAGCTTGGGCAAGTGGGGAATTCTGGCACTGACTCAGTACTAGGGAAGTCCAAAGATGTTGTTGTTGCAACTGGTGGTGGAGTCTCCAAAGTTGCATCCTCACCTTCATCAGGGTCTTCTAAGAGAGCTAGAGCCATTAACAACACATCACTCACTGTTTCATGCCTTGTGGATGGGTGCAATTCAGATCTTAGCAATTGTAGAGACTATCATAGGCGCCATAAGGTGTGTGAACTCCACTCCAAGACCCCAGAAGTCACAATTGGTGGCCTAAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCGCTAGAGCAATTTGATGAAAGAAAAAGAAGCTGCAGGAAACGTTTAGATGGACACAACAGAAGGAGAAGAAAGCCTCAGCCAGAACCTCTTACGCGACCTGGTAGTTTTTTGTCCAATTACCAAGGGACCCAGTTGCTACCCTTCTCAAGTCCACATGTGTATCCTTCCACTGCCATGGTGAGCCCCTCTTGGAGTGGTGGGATAGTCACTTCCTCTGCAGAAGCTAGGTTCTACAACCAACACCACCAAGTGCATCATTTGGTCGAAAAACAAGACCTTTTCCTGGGATCTTCCCACAAGGAAGGGAAGCAAGTAGCATTCTTACACAGCAaccaccaaaccccaccaccttttccacctgcttcgcttctcagaaccgccaccaccgccaccaccacaaccCCTTTAACATCCAATAATAGTAATTCGGTGCATGACTCTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACTCATGGGAACGCCTTGAATCAAATGGTGCAGCCTCCTTCCATGTCCCTCATGCAGCCCTTGGGCCTGAGCCTGCAGGATAATAACAGCCTTGAGTCCGTGAACCATTGTTCGTCCATGTATAGCTTGGGCTCTGATGGGTCCCAGTGCAATGAAGCTCCTCAACTCTCTCCCTTTCAATGGGAATAG 1044 0.4416 MEDQQNRFGVYRMKGEFSVDLKLGQVGNSGTDSVLGKSKDVVVATGGGVSKVASSPSSGSSKRARAINNTSLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLTRPGSFLSNYQGTQLLPFSSPHVYPSTAMVSPSWSGGIVTSSAEARFYNQHHQVHHLVEKQDLFLGSSHKEGKQVAFLHSNHQTPPPFPPASLLRTATTATTTTPLTSNNSNSVHDSPCALSLLSSSQTHTHGNALNQMVQPPSMSLMQPLGLSLQDNNSLESVNHCSSMYSLGSDGSQCNEAPQLSPFQWE 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00315 347 ProSiteProfiles Zinc finger SBP-type profile. 73 150 IPR004333 GO:0003677
Cca03g00315 347 MobiDBLite consensus disorder prediction 137 161 - -
Cca03g00315 347 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 13 347 - -
Cca03g00315 347 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 347 IPR044817 GO:0003677
Cca03g00315 347 Pfam SBP domain 76 149 IPR004333 GO:0003677
Cca03g00315 347 SUPERFAMILY SBT domain 74 155 IPR036893 GO:0003677|GO:0005634
Cca03g00315 347 Gene3D - 67 137 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00315 Cca-Chr3 4962040 4965702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00315 9 347 SBP-box Gene Family AT5G50670 44.413 3.53e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca03g00315 SBP 3.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00315 - - gmx:100787407 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02395 09 49348775 49352462 Cca03g00315 03 4962040 4965702 PCT