Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00311 ATGGAGACACATCAAGTGATGCTCCCTACTTCATCAACTGCTTTTTCATCTGATTTTAATGTTGCTTATCATTCTAATGTTCATGAGGTTTCAAGAACTGATCAGGAGATTAAGCAGCAAAGATATGCATTTCAAACAAGGAGTCCGGTTGATGTTCTGGACGATGGGTACCAGTGGAAGAAATATGGGAAAAAGATAGTGAAAAACAATAAATTCCCAAGAAGTTACTACAAGTGCTCTCATCGAGAGTGCAATGTCAAGAAACAAATCCAACGCCATTCCCTAGATGAACAGATCGTGGTAACAACCTACGAAGGGACTCATACACATCCTGTTGATAATTCAGCAGAAAGCTTCGACCAGATCTTGGGAAACCTATTCGCATGTAACTCAATAATTAATGTGTCTCCCACATTGTAA 420 0.3929 METHQVMLPTSSTAFSSDFNVAYHSNVHEVSRTDQEIKQQRYAFQTRSPVDVLDDGYQWKKYGKKIVKNNKFPRSYYKCSHRECNVKKQIQRHSLDEQIVVTTYEGTHTHPVDNSAESFDQILGNLFACNSIINVSPTL 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00311 139 Pfam WRKY DNA -binding domain 54 111 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g00311 139 SMART WRKY_cls 53 112 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g00311 139 ProSiteProfiles WRKY domain profile. 48 113 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g00311 139 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 1 129 - -
Cca03g00311 139 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 129 IPR044810 GO:0003700
Cca03g00311 139 Gene3D WRKY domain 38 113 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g00311 139 SUPERFAMILY WRKY DNA-binding domain 45 112 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00311 Cca-Chr3 4865994 4873136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00311 40 126 WRKY Transcription Factor Family AT5G13080 65.517 2.68e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca03g00311 WRKY 1.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00311 - - gmx:100796070 209.92