Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00302 ATGGCTAATGCGAACATCTCTAGCACCGAACTCAACGTAAAGCAAGGAGAACCAACCCGAGTTCATCCTTCGGAGGAAACACCAAAGGGACCCTACTTCCTTTCAAACCTTGACCAGAACATAGCTGTTCCTGTGTGCACGGTTTATTGCTTCAAATCTGGTTCGAGGGGGAACGAGGATGCTGCGCGAGTTATCAAGGATGCGTTGTCGAAGATTCTTGTCCCGTATTACCCCATGGCGGGCACGTTGGTTATAAGCTCAGAAGGGAAACTGATAGTGGAAAACCCAGGTGAAGGTGCGGTGTTCGTTGAGGCTGAAGCAAATTGTGACATAGACGTTATAGGGGACTTGACAAAACCACATCCTCATATTCTTGGCAAACTGGTTTACAATGCCCCTGGTGCTCCAAACATTCTTGAGATGCCTCTTATGACTGTTCAGGTGACAAAGTTCAAATGCGGAGGATTTACATTGGGGCTATGCATGAACCACTGCATGAAAGATGGACTCTGCGCCATGGAGTTTGTCAATGCATGGAGCGACACAGCTCGAGGTTTGGACTTAAAGATTCCACCGGTTCTCGATCGAACCATACTCAAAGCACGTGACCCTCCAAAAATACAGTTCCAACACAACGAATTTGCCGAAATAAAAGACGTATCAAACACTCAAAAGCTCTACGAAGAAGAAAACATGCTCTACAAGTCCTTCTTCTTCGACCCCAACAAGCTTGACATGCTCAAGAAAAAGGCCACAGAAGATGGGGCTTTGAAAAAGTGCTCCACTTTCGAAGCGCTTTCAGGTTTTGTATGGAGGGCTCGAACCGCAGCACTAGGGATGCAACATGATCAAGAAACGAAGCTTCTCTTTGCGGTTGATGGAAGGAAAAGATTCGTGCCTCCAATTCCTGAAGGGTACTTCGGCAATGCTATTGTGTTGACAAATTCGTTGTGTAAGGCAGGGGAGTTATTGAAGAACCCTTTGTCTTTTTCTGTGGGATTGGTTCGTAAGGCTATTGAGATGGTCACTGATGGTTATATGAGATCTGCTATTGACTATTTTGAAGTCACAAGAGAAAGGCCTTCTCTAACAGCCACTCTTTTGATCACAACTTGGACTAAGTTGTCTTTTCACACCACGGATTTTGGGTGGGGAGAGCCTCTTTGTTCTGGTCCTGTCACCTTGCCGGAGAAAGAGGTTGTTTTGTTCTTGTCACATGGTAAAGAAAGGAAGAGCATAAATGTTCTTCTGGGGTTGCCTAGTTCTGCCATGGAAATTTTTGAAGCACTGGTGATGCAGGTTTGA 1305 0.4567 MANANISSTELNVKQGEPTRVHPSEETPKGPYFLSNLDQNIAVPVCTVYCFKSGSRGNEDAARVIKDALSKILVPYYPMAGTLVISSEGKLIVENPGEGAVFVEAEANCDIDVIGDLTKPHPHILGKLVYNAPGAPNILEMPLMTVQVTKFKCGGFTLGLCMNHCMKDGLCAMEFVNAWSDTARGLDLKIPPVLDRTILKARDPPKIQFQHNEFAEIKDVSNTQKLYEEENMLYKSFFFDPNKLDMLKKKATEDGALKKCSTFEALSGFVWRARTAALGMQHDQETKLLFAVDGRKRFVPPIPEGYFGNAIVLTNSLCKAGELLKNPLSFSVGLVRKAIEMVTDGYMRSAIDYFEVTRERPSLTATLLITTWTKLSFHTTDFGWGEPLCSGPVTLPEKEVVLFLSHGKERKSINVLLGLPSSAMEIFEALVMQV 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00302 434 Gene3D - 215 433 IPR023213 -
Cca03g00302 434 Pfam Transferase family 16 428 - -
Cca03g00302 434 MobiDBLite consensus disorder prediction 1 15 - -
Cca03g00302 434 Gene3D - 7 214 IPR023213 -
Cca03g00302 434 PANTHER OMEGA-HYDROXYPALMITATE O-FERULOYL TRANSFERASE 12 431 - -
Cca03g00302 434 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 12 431 - -
Cca03g00302 434 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00302 Cca-Chr3 4587976 4591795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00302 10 434 Monolignol Biosynthesis Gene Families AT5G48930 37.104 7.08e-93 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00302 K15400 - gmx:100794490 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00302 03 4587976 4591795 Cca03g00302 03 4587976 4591795 ECH