Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00300 ATGTTTCTTAAAAAGGGAAAGTGGAAGCAAAGCATGATTTTCAAGGCGTGGGAGCGTTGTCGATTTTCCAGGCCACACTTGAAGCTAAAATCACTGTCAGATAACGATGATGAGAAGGGTCAAATAGCGCCACATGGTTGTTTTTCGGTGCATGTTGGACCAGAGAGACAAAGGTTCGTGGTGAAGACGAAATACGTTAACCACCCACTGTTTCAGATGCTGCTGGAAGAGGCAGAAGAGGAATATGGGTTCGAAAGTGATGGCCCTATTTGTCTTCCTTGCAACGTGGATTTGTTCTACAAAGTGTTGGCGGAGATGGATGGTgaagaagaagagaataacaataataataataataatattaTCGTTGTAACTAAGGTTTTTCCCTTCTTCGTTCTTCCGAGCCCAGCACGTCTTCTTTGTTACATGAACAAGGATCATGCTGCGTACAGCGTTGTGGATTCGGAATTGCTGAGGATAAACCGGTGTTAA 492 0.4167 MFLKKGKWKQSMIFKAWERCRFSRPHLKLKSLSDNDDEKGQIAPHGCFSVHVGPERQRFVVKTKYVNHPLFQMLLEEAEEEYGFESDGPICLPCNVDLFYKVLAEMDGEEEENNNNNNNNIIVVTKVFPFFVLPSPARLLCYMNKDHAAYSVVDSELLRINRC 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00300 163 Pfam Auxin responsive protein 24 104 IPR003676 GO:0009733
Cca03g00300 163 PANTHER SMALL AUXIN-UP RNA-RELATED 10 147 - -
Cca03g00300 163 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 10 147 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00300 Cca-Chr3 4577066 4577822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00300 13 119 Calmodulin-binding Proteins AT4G34750 36.449 8.65e-19 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00300 K14488 - gmx:100793967 240.736