Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00293 ATGGAAAGGCTAAATTTTATCAAAAATGGAATGAGTAGATTGCCTCCCGGATTTCGTTTCCAGCCAACTGATGAAGAGCTTGTGTTTCAGTACTTGAAGTGTAAGATCTTCTCGTGCCAGTTACCTGCTTCAATCATTCCTGAGATCAATGTCAGCAAGTATGATCCTTGGGATTTTCCAGGAAATTGTGATGAGCAAGAGAGGTACTTTTTCAGCTCCAAGGAAACGAAGTATCGAAACGGAAATCGCATGAACCGAACAACTAACTCTGGATATTGGAAGGCAACAGGATCAGACAAAAAAATTTCATCATCAATAAGTAATAATGGCATTGCCGGGGTGAGAAAAACTCTAGTATTTTACGAAGGGAAATCTCCAAATGGGTCTCGAACTGATTGGGTCATGCATGAATATCGACTCGTCAGCTTAGAATCTGATGCTTCCAATTCATCCCAGAACTATGCAAACGAGATAGGGGATTGGGTTCTGTGTCGCATGTCCATGAAGAAAAGAAGTAAAGAAAGTGGTGACAACTCTACTGCTCCCAGGAAGAACAATACAATGAGGAATTCTGTTCAGGTGGATCAGCCAAGATTCTTTGATTTTTTGAGTGTTCAAAATTCAGCTCCAGCTCCTATACATTCTTCTACATCCTCGTCTTCTTCAAGTTCCAATAACTTTGTAGAGGTCTCTTCACCTAACCACGAAGAAACAAGCGGCTATGCTGATTTTTAA 735 0.4068 MERLNFIKNGMSRLPPGFRFQPTDEELVFQYLKCKIFSCQLPASIIPEINVSKYDPWDFPGNCDEQERYFFSSKETKYRNGNRMNRTTNSGYWKATGSDKKISSSISNNGIAGVRKTLVFYEGKSPNGSRTDWVMHEYRLVSLESDASNSSQNYANEIGDWVLCRMSMKKRSKESGDNSTAPRKNNTMRNSVQVDQPRFFDFLSVQNSAPAPIHSSTSSSSSSSNNFVEVSSPNHEETSGYADF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00293 244 MobiDBLite consensus disorder prediction 210 244 - -
Cca03g00293 244 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 244 - -
Cca03g00293 244 SUPERFAMILY NAC domain 10 169 IPR036093 GO:0003677|GO:0006355
Cca03g00293 244 ProSiteProfiles NAC domain profile. 14 169 IPR003441 GO:0003677|GO:0006355
Cca03g00293 244 MobiDBLite consensus disorder prediction 169 192 - -
Cca03g00293 244 Gene3D NAC domain 23 174 IPR036093 GO:0003677|GO:0006355
Cca03g00293 244 Pfam No apical meristem (NAM) protein 15 140 IPR003441 GO:0003677|GO:0006355
Cca03g00293 244 MobiDBLite consensus disorder prediction 210 238 - -
Cca03g00293 244 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00293 Cca-Chr3 4417713 4419722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00293 1 172 NAC Transcription Factor Family AT5G13180 60.465 5.62e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca03g00293 NAM 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00293 - - gmx:100527806 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00293 03 4417713 4419722 Cca09g02375 09 49096328 49098704 ECH
Cca07g02557 07 54645386 54646723 Cca03g00293 03 4417713 4419722 ECH
Cca03g00293 03 4417713 4419722 Cca03g00293 03 4417713 4419722 ECH