Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00291 ATGGGTTGCGTGCTCGGGACGCCGGCGGGAGCCGGAGATCAGCGCCGTCGCCGGAGAGAGAAGCGTGAGGCCGCTGCCGAGGGAGGTAATAATGTCGTTAGGGTTCGAGAGAGGGAGAGGAACCACCACACCGGCGATTTTCCGGCGCCGGAGCGCCGGAAACCTAGACTCGATCCGTGCGCCGTCACGCAGCAGGGATGGCCGTCGTGGTTGATGGCCGTCGCCGGCGAAGCAATCGGCGATTGGACTCCTCGTCGCGCGAACACGTTCGAGAAACTCGCTAAGATTGGGCAAGGGACGTATAGTAATGTGTATAAGGCGAGGGACCTTGTTACGGGGAAGATTGTGGCATTGAAGAAAGTGAGATTTGATAATTTGGAGCCGGAGAGTGTTAAGTTCATGGCGAGAGAGATACTTGTTTTGAGGAGGCTTGATCACCCCAATGTTGTGAAGCTTGAGGGTTTGGTTACTTCTAGAATGTCGTGCAGTCTTTATTTGGTGTTTGAGTATATGGAGCATGATCTTGCAGGGCTTGCTGCTGGCCAAGGTGTTAAGTTCACTGAACCTCAGGTTAAATGCTTTATGAAGCAATTACTCTCTGGTCTTGAGCATTGCCACAGTCGAGGCGTGTTGCACCGTGATATCAAGGGTTCCAATCTGCTTATTGACAATGAAGGAGTCCTTAAAATTGCAGATTTTGGACTGGCAACTTTTTATGATCCTAAGATAAAACAGGCAATGACGAGCAGAGTTGTGACCCTTTGGTATCGTCCCCCTGAGCTGCTTCTTGGGGCTACATTGTATGGTGTTGGTATTGACCTTTGGAGTGCTGGTTGCATCTTGGCAGAGCTGCTTGCTGGAAAACCAATAATGCCTGGCCGAACAGAGGTTGAACAACTGCACAAAATATTTAAATTGTGTGGTTCTCCATCTGAGGAATATTGGAGGAAGTATAGGTTGCCAAATGCTACCATCTTTAAACCCCAGCAGCCATATAAACGTTGCATCTCAGAAACATTCAAGGATTTTGCTCCATCTTCACTACCCTTAATTGAAACTCTTCTTGCAGTAGATCCCGATGATCGAGGCACTGCCTCAGCAGCACTAAATAGTGAATTCTTTACCACAGAGCCCCATGCTTGTGAACCATCGAGTTTGCCAAAGTATCCTCCCAGCAAAGAATTGGATGTAAAACTGAGAGATGAAGAAGCAAGAAGGCAAAAGGCTCTAAATGGAAAAGCTAGTGCAGTTGATGGTACAAAAAAAGTCAGAACAAGAGAGCGTGGTCGGGCCATTCCGGCCCCTGAAGCCAATGCAGAGATCCAAACAAACTTAGATAGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGCAAGAGTGAGAAATTTCCCCCTCCTCATCAAGATGGTGCTGTTGGATATCCACAGGATGCATCGAATAAAGGACCTGTTTCGTTTGGCGCCCCTGACACTTCCTTTTCTTCAGGGATATTTAATCCAAAACCTTCCGCACCTGGTAGAAGTCATGCTGCTGCTGCAGGAGTTTACAGAGGGAGGAAAACTAAAAAAGAAGAGCCTCAGATGGCGTCATCGTGGAAATTCATGCGTCCATTCAAGCCATCAACAGTTGGACTTTCTATGGATTTATTATTTAGGAGCAAATAA 1665 0.4781 MGCVLGTPAGAGDQRRRRREKREAAAEGGNNVVRVRERERNHHTGDFPAPERRKPRLDPCAVTQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGVLKIADFGLATFYDPKIKQAMTSRVVTLWYRPPELLLGATLYGVGIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWRKYRLPNATIFKPQQPYKRCISETFKDFAPSSLPLIETLLAVDPDDRGTASAALNSEFFTTEPHACEPSSLPKYPPSKELDVKLRDEEARRQKALNGKASAVDGTKKVRTRERGRAIPAPEANAEIQTNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPQDASNKGPVSFGAPDTSFSSGIFNPKPSAPGRSHAAAAGVYRGRKTKKEEPQMASSWKFMRPFKPSTVGLSMDLLFRSK 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00291 554 PANTHER CELL DIVISION PROTEIN KINASE 62 510 - -
Cca03g00291 554 MobiDBLite consensus disorder prediction 409 429 - -
Cca03g00291 554 SMART serkin_6 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00291 554 Gene3D Phosphorylase Kinase; domain 1 77 172 - -
Cca03g00291 554 MobiDBLite consensus disorder prediction 485 501 - -
Cca03g00291 554 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Cca03g00291 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Cca03g00291 554 MobiDBLite consensus disorder prediction 1 56 - -
Cca03g00291 554 CDD STKc_CDK9_like 90 374 - -
Cca03g00291 554 MobiDBLite consensus disorder prediction 12 56 - -
Cca03g00291 554 Gene3D Transferase(Phosphotransferase) domain 1 173 414 - -
Cca03g00291 554 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 62 510 - -
Cca03g00291 554 Pfam Protein kinase domain 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00291 554 MobiDBLite consensus disorder prediction 456 531 - -
Cca03g00291 554 ProSiteProfiles Protein kinase domain profile. 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00291 554 SUPERFAMILY Protein kinase-like (PK-like) 84 379 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00291 Cca-Chr3 4386612 4390663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00291 82 408 Core Cell Cycle Gene Families AT5G10270 51.603 4.34e-116 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca03g00291 Pkinase 4.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00291 K08819 - gmx:100807756 1030.78