Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00289 ATGAAGGAATCATCCGCCGAACCAGACCCTATCCGCGATTCCCTGCACCTCCTGTGCACCCTACTCGACTCGGAAATCCCCACCGTCACCAACTTCAAAGGGAAATGGTCACTCGCCCGAGTCAAACTCACCCTCCTCCAGACCCACCTCACCGATTTCTCCGCCGAGTTCCCCAACGcctccacctccaaccccctctccctccacctcctcgattccatctcccgcacgctccaccacgccctctccctcGCTCGCACGTGCCAACCCCACCAACTCCCCAACGGGAAGCTCAAAACCCAAAGCGACCTCGACTCACTCCTCGCCACCCTCCACCGCCACGTCACCGACTGCGACATCCTCTTCCGCAGCGGCCTCCTCCTCGAAAACAACAATAACCTCTCCACCCCCTCCAAACGCGAGGCCACGCGCTCCGCTTCAAGAAACCTAATAACCCGACTCCAAATCGGGTCGCCCGAATCCAAATCCACCGCAATGGACTCCTTATTGGGCCTCCTCCACGAAGACGACAAAAACGTCACCATAGCCGTGGCCCAGGGCGTCGTTCCCGTGCTCGTGCGCCTACTCGATTCCCCCTCCGAAATGAAGGAAAAAACCGTTGCCGCCATTTCCAGAGTCTCTACCGTCGAAACCGCCAAAAACGTTCTCCTCGCGGAAGGcctcctcctcctcaaccacctcctccgcgtcctcGACTCCGGAAGCGCCTTCGCCATTGAAAAGGCCTGCATCGCGCTTCAGGCGCTCAGCTTAACCAAGGACAACGCCAGAGCCATCGGCTCCCGCGGAGGAATCTCCTCGCTCCTCGAGATTTGCCAGGCTGGCACCCCCGGCGCGCAGGCCTCCGCCGCCGCCGTGCTAAAGAACCTCGCCGCCTTTTCCGAAATCAGAGACAATTTCGCCGAGGAGAACGCGGTGGTGGTTTTGCTCGCTTTAGCCTCCTCCGGAACCGCTTCTGCGCGTGAGAACGCGGTTGGTTGTTTGTCCAATTTGATTTCAGAGGACTCCGAGGGTTTGTCGAATTTGAGGGTTTCGGTAGTGAAGGAAGGTGGTGTGGAGTGCTTGAAGAATTACTGGGACTCCGGTGTTCCTCTTGCGAGTCTGGAAGTTGCGGTGGATATGGTGCGGCATTTGGCGGCTTGTAGCGGAGCCATTGGCGAGGTTCTTGTGACGGAAGGGTTTGTGCAGAGGGTGGTGGCGGTGTTGAGTTGCGAGGTGCTGGCGGTTAGGGTTTCGGCGGCGAGGGCGGTTCACGCGTTGGGGATGAACAGTAACAAAGCGCGGAAGGAGATGGGGGAATTGGGATGCGTTTCGGGTTTGATCAAGATGTTGGATGGGAAGGGCGTGGAGGAGAAAGAAGGTTCCGCGATGGCATTGTCGGTGCTGCTGATGCACCCGGCGAATCGGAAGGTGTTTCGGAAGGACGAAAGAGGAGTTGTGAGCGCAGTTCATCTCTTGAACCCTTCGTTGCAGGGGTTGGATAAGAAGTACCCTGTTTCGTTGCTCGCTTCTCTTGTGCACTCCAAGAGTTGCCGGAAGCAGATGGTGGCTGCGGGGGCCTCTGTATATACGCAGAAGCTTGTGGAGATGGATGTTCCCGGGGCCAAGAAACTCGCCGAGAGCCTCGGCCGTGGCAAGATTTGGGGTGTTTTTGCTAGACCCTAG 1686 0.5415 MKESSAEPDPIRDSLHLLCTLLDSEIPTVTNFKGKWSLARVKLTLLQTHLTDFSAEFPNASTSNPLSLHLLDSISRTLHHALSLARTCQPHQLPNGKLKTQSDLDSLLATLHRHVTDCDILFRSGLLLENNNNLSTPSKREATRSASRNLITRLQIGSPESKSTAMDSLLGLLHEDDKNVTIAVAQGVVPVLVRLLDSPSEMKEKTVAAISRVSTVETAKNVLLAEGLLLLNHLLRVLDSGSAFAIEKACIALQALSLTKDNARAIGSRGGISSLLEICQAGTPGAQASAAAVLKNLAAFSEIRDNFAEENAVVVLLALASSGTASARENAVGCLSNLISEDSEGLSNLRVSVVKEGGVECLKNYWDSGVPLASLEVAVDMVRHLAACSGAIGEVLVTEGFVQRVVAVLSCEVLAVRVSAARAVHALGMNSNKARKEMGELGCVSGLIKMLDGKGVEEKEGSAMALSVLLMHPANRKVFRKDERGVVSAVHLLNPSLQGLDKKYPVSLLASLVHSKSCRKQMVAAGASVYTQKLVEMDVPGAKKLAESLGRGKIWGVFARP 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00289 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 16 561 - -
Cca03g00289 561 SMART arm_5 300 340 IPR000225 GO:0005515
Cca03g00289 561 SMART arm_5 176 215 IPR000225 GO:0005515
Cca03g00289 561 SMART arm_5 431 471 IPR000225 GO:0005515
Cca03g00289 561 SMART arm_5 259 299 IPR000225 GO:0005515
Cca03g00289 561 Gene3D - 373 539 IPR011989 -
Cca03g00289 561 SUPERFAMILY ARM repeat 149 494 IPR016024 -
Cca03g00289 561 Gene3D - 136 370 IPR011989 -
Cca03g00289 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 187 228 IPR000225 GO:0005515
Cca03g00289 561 PANTHER BNAC03G16340D PROTEIN 16 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00289 Cca-Chr3 4367593 4372468 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00289 149 300 U-box Gene Family AT3G46510 33.117 5.26e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00289 - - pvu:PHAVU_009G163700g 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00289 03 4367593 4372468 Cca03g00289 03 4367593 4372468 ECH