Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00288 ATGGCAGCTTTTTCATACCAGTACCACCCTTTCCTTGTTGACCCTGCATTCTTCCCCAACATGCACACTCCTCCTTCTCCTCCTCACTTTCACTTTCCTCAGGAAACATCTCCTAATGTCACTAACCAGGAAACTAGCTGTGTTGACCAAAGTTCCAAGATCACCATCAGTGACAATGAGCCTTCTGTCACCAAAAACCTTAGTCCTCAGTCCTCCATGGTGGTGGACAAGCTTGAAACTGGTGAACAGGTCACTCAGAAGGTGACTCCTGTCCAGAAGAAAAGGAGAACCAGAAATGGATCTTCCTTGAGCAACCCTCAATCCAAGGATATTGCAACAGAAGGGAGGAACAAGAAACAAAGGAAGAGCAATTGTGGGGTGAaagaagaggagaaggcaaaagaagagaagaaggagaaaaagTGTGCTGAAGAGCCCCCAACTGGCTATATCCACGTCAGAGCAAGAAGGGGTCAGGCAACGGATAGCCACAGCCTTGCTGAGAGGGTGAGAAGAGAGAAGATAAGTGAAAGGATGAAGGTGTTGCAACGGCTTGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTTGAGTTCTTGTCAATGAAGCTGGCTTCTGTGAGTCCCATGTTTTATGATTTGACAACGGACCTAGACTCACTATTTGTTAGACCAGAGAAACTAAATAGCATGGCATCACCATCACCACTTCCATCTGTGTCACATTGCAACAGCCCCAACCAAGCCACAACTTTTGCTGATACAACCACCATGAACCCCACCAACATCTTCCACACCGCTAGTGACTATCTTTTGGACAATTCCGCTTCACTTTTTCTTCAAGGGCAGCGGTCCAATGTCTTCTCTGAAGAGGATACCGGTAGTCAATTCTGGGACGCAGAGGACCAGAGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATGTTCCTTTCATTAA 1014 0.4398 MAAFSYQYHPFLVDPAFFPNMHTPPSPPHFHFPQETSPNVTNQETSCVDQSSKITISDNEPSVTKNLSPQSSMVVDKLETGEQVTQKVTPVQKKRRTRNGSSLSNPQSKDIATEGRNKKQRKSNCGVKEEEKAKEEKKEKKCAEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVSPMFYDLTTDLDSLFVRPEKLNSMASPSPLPSVSHCNSPNQATTFADTTTMNPTNIFHTASDYLLDNSASLFLQGQRSNVFSEEDTGSQFWDAEDQRQKFLHPYGFSNNLCSFH 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00288 337 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
Cca03g00288 337 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 337 IPR024097 GO:0006355
Cca03g00288 337 SMART finulus 165 215 IPR011598 GO:0046983
Cca03g00288 337 Gene3D - 156 228 IPR036638 GO:0046983
Cca03g00288 337 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 337 - -
Cca03g00288 337 MobiDBLite consensus disorder prediction 249 271 - -
Cca03g00288 337 MobiDBLite consensus disorder prediction 112 149 - -
Cca03g00288 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 209 IPR011598 GO:0046983
Cca03g00288 337 MobiDBLite consensus disorder prediction 57 149 - -
Cca03g00288 337 CDD bHLH_AtBPE_like 149 234 - -
Cca03g00288 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 226 IPR036638 GO:0046983
Cca03g00288 337 MobiDBLite consensus disorder prediction 57 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00288 Cca-Chr3 4335276 4338170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00288 1 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 48.627 5.40e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g00288 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00288 - - gmx:100796018 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00288 03 4335276 4338170 Cca03g00288 03 4335276 4338170 ECH