LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca03g00284	ATGCCAAACAGGATGGAAAAAGAGGTTCCCCCGGCAATCACCAACTCGTGGCAAAAGCAAAACCAGGAGTTGCAGGGTAAAGGTGAAGTGGAAAAGGAAGAGGCTTTGCCTCTCAGCGTTACTTCCAAGGTTTTGTACATGTTGGGAGACATCACAGCAGGGCCTGCGTTTATGTTCGCGCAATGGCTCCAATTAGTTCGTAAACGCACTTCCAACTATCGCTCCTCTGGCTTCCCACACCGTCCTTCCACCATGCCTTCTAGCCCGAGAGAATCTATTGAGGATGCAAAAATTGATCCGCAAACTGAAATTAGTCTGTGGGAGAGGCTTGGTAAAGCTGAGATGTTGGACATTGAATCAAGTTCCTTTTCTTGGGATAGGCTCTCTTCACTTCACCATACTGAACATACTAGCAGCAATGAACATTCTGAGGATGAAATGAACAAAGCTCTTGAGGTAACAGTAAATTCTGGAGGGGTGGTCTTTTTTGCCTTTTTCAATGGCATTGGAAGTGATGATGTTTTTTCAAAAGAAGCAGCAGCTGTTATAAAGATATCTTCTTCAAGAATGGCCACACAATCTGAACGCCTTGGTTATGAATTTGCCAAGTGGTTGGGAGTCCAAACTCCGCAGGCTAGAGTCATCCACAATACCAGTATAGAGTGGATCCAAATAAAGGAAGCTACAGAAAAAGCAAGAGATGCAGCAATTTGTGCAGGTGATGAAATTGGTGAAATGACATGCACAGAACTTTTGGAAGCACTTGAGCTTAGCCGATGTCTCATGTTTATGAGTTATGTGCACGGTTCACCCTTGCTTGAGAGCTCTAGAGCATTTGAGTCTGAGGAATATGCAGAAAGAACATCATCAGCCCTTGGCAGGATAATGATGCTAGATCTTGTCATCAGAAATGAAGATAGACTCCCCTGCCGCCAACTTAGATGGCGTGGGAACTCTGCAAATTTGTTATTGACTGAAAAGATGATCTCTGCAAGTACGGATACAATGGGAGAATCTTTTGATTCTGCTATGAACCGATATGGATTGAGAGTGAGTAAGACATTTAAAAAAGAAAAAAGGTCAACCTCAGTAGACAGCAGATTGGATTCTCATAATCCTGGATTAGTATCACAAGGCTCTGGTCTTCCAGACATCATAGAATCATCAATACCCATTGACATCATGAGTCTTACAAGTCAAACGTCAGTAGAATCAATGCTTCCTGACTTTAACATTGTGGCTATTGATTCTGGTGTTCCTCGCCGACCCCCTGCTGGAAAACGTGCAGATGATCATGTTAATTATCCTAAGTTGGTTGAGTTAATACTCAATAGTTCTGAGTTTTCCTCTAACCTGTTACATGATATAACTGGAGGGAGATTAGGATGTGCTGCCCCAGAAGATGCAAATACTATAACTGATATTCATGCTGGAAATGTAACATCGGTAGTTCATGAGTTCCGCAGCGGTTTCCGTGCTGCTCTAAGAGATCTACAGGGATTCCATATATTCCTACTAACACTTCACCAAAAACTTGATAACTTATTAAGATCATTTATGAATGCTATAGGCAAAATATCATCAGGGGAGTCTGAAAAGGAGGATGCAGTGGTTCCGCACTCACCTTCACCAGTTGCTGCTGGTAATTGTCCCTCTCCAACTATTAAGGAAAGGTTTTCTAATGATATCCATCACGATTATAGTGATTCAGAATCCCAGAGAACTGCTCCAAGGGCATCATCATCTTCAGTCAATAGAGATTGCTGTGACTCTGCTTCTCCTGGGTCAAGAGAAGGTTGGCATGGAAAGCACAGTAAAGGAAGTGGGGAGTCACTTCGTGGTCTCCGCTTGACAGTTAAGCTCCGTGATTTGCATAAATTTGCCAAGGTTGACTCTGAATCTAATAAAGAATTAGAACAATGGAATGAAATGCTTAAAAATGATGCAGTCAAGTTATGCCAGGAGAACAATTTCAACCCAGGATTTTTTGAGGGCAGTGATAACAACACTGCTGTTGATGCATATGAACTGAAGGTTAGACTTGAGCATATCCTTGAGAGGATTACATTGATATCCGAGGCTGCAAACACAGAGAGACCATCTGCTGTTACAAATAGTCTGTTCATTGGTGGAGCACTGGCTGCAAGATCTACATACACACTACAACACTTGGGAATCACACATATTTTATGCTTGTGTACAAATGAAATTGGTCAATCGGATTCTCAGTTTCCTGATCTATTCACTTACAAAAATTTCTCTGTGTGTGACAATGAAGATTCTAACATCAGCAGCATATTTGAAGAGGCTTGTGATTTTATAGATTATGTTGAGCAAACTGGTCAGAGTGTTTTAGTTCATTGCTTTGAGGGGAGAAGCAGAAGTGCCACTTTGGTCCTTGCTTACCTGATGTTGAGGAAGAAATTCACTTTATTAGAAGCATGGAATGCTCTGAAACGAGTTCATCGTCGATCACAGCCCAATGATGGTTTTGCAAAGATCTTACTGGAACTGGACCAGAAACTGCATGGGAAGGTTTCAATGGAGTGGCAACAAAGGAAACCAATGATGAAAATTTGCCCTATTTGTGGCAAGAATGCTGGATTAAGCAGCAGCTCGCTTAAACTCCATCTTCAAAAATCACATAAAAAGTTGTCATCAGGGAGTGTAGATAGTGCCATGACAATGGAGATCCAGAAGGCTTTAACAGCTTTGAAGGTTAGCCGTGGTGGAAGTGTCAGTCCCACACAAAAACAGTCTCATTCAATGATAGATGGATAG	2781	0.4196	MPNRMEKEVPPAITNSWQKQNQELQGKGEVEKEEALPLSVTSKVLYMLGDITAGPAFMFAQWLQLVRKRTSNYRSSGFPHRPSTMPSSPRESIEDAKIDPQTEISLWERLGKAEMLDIESSSFSWDRLSSLHHTEHTSSNEHSEDEMNKALEVTVNSGGVVFFAFFNGIGSDDVFSKEAAAVIKISSSRMATQSERLGYEFAKWLGVQTPQARVIHNTSIEWIQIKEATEKARDAAICAGDEIGEMTCTELLEALELSRCLMFMSYVHGSPLLESSRAFESEEYAERTSSALGRIMMLDLVIRNEDRLPCRQLRWRGNSANLLLTEKMISASTDTMGESFDSAMNRYGLRVSKTFKKEKRSTSVDSRLDSHNPGLVSQGSGLPDIIESSIPIDIMSLTSQTSVESMLPDFNIVAIDSGVPRRPPAGKRADDHVNYPKLVELILNSSEFSSNLLHDITGGRLGCAAPEDANTITDIHAGNVTSVVHEFRSGFRAALRDLQGFHIFLLTLHQKLDNLLRSFMNAIGKISSGESEKEDAVVPHSPSPVAAGNCPSPTIKERFSNDIHHDYSDSESQRTAPRASSSSVNRDCCDSASPGSREGWHGKHSKGSGESLRGLRLTVKLRDLHKFAKVDSESNKELEQWNEMLKNDAVKLCQENNFNPGFFEGSDNNTAVDAYELKVRLEHILERITLISEAANTERPSAVTNSLFIGGALAARSTYTLQHLGITHILCLCTNEIGQSDSQFPDLFTYKNFSVCDNEDSNISSIFEEACDFIDYVEQTGQSVLVHCFEGRSRSATLVLAYLMLRKKFTLLEAWNALKRVHRRSQPNDGFAKILLELDQKLHGKVSMEWQQRKPMMKICPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALKVSRGGSVSPTQKQSHSMIDG	926

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca03g00284	926	ProSitePatterns	Tyrosine specific protein phosphatases active site.	786	796	IPR016130	GO:0016311\|GO:0016791
	Cca03g00284	926	SMART	dsp_5	699	841	IPR020422	GO:0006470\|GO:0008138
	Cca03g00284	926	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	699	844	IPR020422	GO:0006470\|GO:0008138
	Cca03g00284	926	MobiDBLite	consensus disorder prediction	573	590	-	-
	Cca03g00284	926	Gene3D	-	271	382	IPR036940	GO:0016301
	Cca03g00284	926	MobiDBLite	consensus disorder prediction	73	90	-	-
	Cca03g00284	926	MobiDBLite	consensus disorder prediction	597	611	-	-
	Cca03g00284	926	Pfam	Dual specificity phosphatase, catalytic domain	713	840	IPR000340	GO:0008138\|GO:0016311
	Cca03g00284	926	MobiDBLite	consensus disorder prediction	530	611	-	-
	Cca03g00284	926	PANTHER	DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1	18	925	IPR035010	GO:0004721\|GO:0009737\|GO:0043622
	Cca03g00284	926	MobiDBLite	consensus disorder prediction	558	572	-	-
	Cca03g00284	926	PANTHER	DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN	18	925	-	-
	Cca03g00284	926	Pfam	Actin-fragmin kinase, catalytic	103	419	IPR015275	-
	Cca03g00284	926	SUPERFAMILY	Protein kinase-like (PK-like)	61	432	IPR011009	-
	Cca03g00284	926	MobiDBLite	consensus disorder prediction	73	94	-	-
	Cca03g00284	926	CDD	DSP	700	837	-	-
	Cca03g00284	926	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	699	844	IPR029021	-
	Cca03g00284	926	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	768	820	IPR000387	GO:0016311\|GO:0016791
	Cca03g00284	926	Gene3D	Protein tyrosine phosphatase superfamily	682	854	IPR029021	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca03g00284	Cca-Chr3	4227529	4234114	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca03g00284	31	910	Protein tyrosine phosphatase (PTP) family	AT5G23720	64.765	0.0	1116

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca03g00284	K14165		-	gmx:102661225	1501.49

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca03g00284	03	4227529	4234114	Cca03g00284	03	4227529	4234114	ECH