Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00281 ATGAAAGATATATATAGAAGGAGACAAAAAGTGGGCATGTCCACAATAAACAACGTTCCCTGTCCCTGGATGGAGGAAAGAGAAGACGAAAACTCTGCTTGTGTTTCTGCTTCGTGGCCCATTAACTCGAGGCCCAACAACATGATAAGCAGCGACACAAACACAAGCTCTGGTTTCCTCCCAAACGACTTGTGCGCCTTGAAGCCCATGAAGCGAGCCGCGCTACGGAAGAACGTCACCAAGCCCCACCACTTTCACCATGCTACCTTCAATTATGACTCTGATGACTTCACTCAGACTAATACTAACACTGCTCCTAAGCTCGATGAGCTTAGTGCTAACAACGCTGCCAATACCTCCAATGGGAACACCACTCCTTTCGACCACAAGGGCAAGAAGAAGGGAATGCCCGCTAAGAATTTGATGGCCGAACGACGTCGTAGGAAGAAGCTCAATGATAGACTCTACATGCTTAGGTCCGTTGTTCCTAAGATTAGCAAAATGGACAGGGCTTCAATCCTTGGAGATGCAATTGAGTATCTTAAGGAGCTTCTGCAAAGGATTAATGATCTTCATAACGAGTTGGAGTCGACTCCTGCTGGTTCTGCACTCACTCCTGTCTCCACTTTCCATCCTTTGACGCCTACTCCTCCTACACTGCCCAGCCGTATCAAAGAAGAACTGTGCCCCAGTTCATTGCCAAGCCCCAATGGCCAACCTGCTAGGGTTGAGGTTCGGCTGCGCGAAGGAAGGGCTGTTAACATCCACATGTTTTGTGCCCGCAAACCTGGTCTGTTGCTCTCAACCATGAGGGCTTTGGATAACCTTGGATTAGACATTCAGCAGGCTGTTATTAGCTGTTTCAATGGATTTGCTATGGATATTTTTCGAGCGGAGCAATGCAAAGAAGGTCAGGATGTTCATCCGGAGCAAATCAAAGCAGTTCTCTTGGATTCAGCAGGCTACAATGGCATGATGTAA 981 0.4771 MKDIYRRRQKVGMSTINNVPCPWMEEREDENSACVSASWPINSRPNNMISSDTNTSSGFLPNDLCALKPMKRAALRKNVTKPHHFHHATFNYDSDDFTQTNTNTAPKLDELSANNAANTSNGNTTPFDHKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPAGSALTPVSTFHPLTPTPPTLPSRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGYNGMM 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00281 326 Coils Coil 174 198 - -
Cca03g00281 326 Pfam Helix-loop-helix DNA-binding domain 142 184 IPR011598 GO:0046983
Cca03g00281 326 MobiDBLite consensus disorder prediction 110 136 - -
Cca03g00281 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
Cca03g00281 326 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 82 326 - -
Cca03g00281 326 SMART finulus 141 190 IPR011598 GO:0046983
Cca03g00281 326 MobiDBLite consensus disorder prediction 110 126 - -
Cca03g00281 326 Gene3D - 129 199 IPR036638 GO:0046983
Cca03g00281 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 204 IPR036638 GO:0046983
Cca03g00281 326 CDD bHLH_AtAMS_like 138 202 - -
Cca03g00281 326 CDD ACT_UUR-ACR-like 255 315 - -
Cca03g00281 326 PANTHER BHLH TRANSCRIPTIONAL FACTOR 82 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00281 Cca-Chr3 4186114 4190626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00281 136 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 87.195 1.91e-99 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g00281 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00281 - - vra:106778861 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00281 03 4186114 4190626 Cca09g02359 09 48937439 48941391 ECH
Cca03g00281 03 4186114 4190626 Cca03g00281 03 4186114 4190626 ECH
Cca09g02359 09 48937439 48941391 Cca03g00281 03 4186114 4190626 PCT