Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00280 ATGGCATCATCGGAGGTCACCATGAAGGGAAATTGCATCAGCCATAACGACGGAGGAACTGCCGAGCCTCATTCGCCCAAAGACGCCGAAGCAGCACTTTTCAGGGAACTGTGGCACGCCTGCGCCGGTCCTCTCGTCACGGTGCCGCGGGAGAGAGAGCGCGTCTTTTATTTTCCTCAGGGGCATATTGAGCAGGTGGAGGCGTCGACGAATCAAGTGGCGGACCAGCACATGCCGGTTTACGATCTTCCGCCCAAGATCCTTTGTCGGGTCATCAACGTGCAGCTCAAGGCCGAACCCGACACGGATGAGGTGTTTGCTCAGGTCACTTTGCTTCCGGAGCCAAATCAAGATGAGAATGCCGTGGAGAAAGAGCCTCCGCCTCCTCCGCCGCCGCGGTTTCATGTTCATTCTTTCTGTAAGACTCTGACGGCGTCTGATACGAGTACCCATGGTGGGTTTTCCGTGCTGAGACGGCATGCTGATGAGTGTCTTCCTCCCCTGGATATGTCCAAGCAGCCACCCACCCAGGAATTGGTGGCTAAGGATCTTCATGGGAATGAATGGCGATTTAAACATATTTTTCGGGGTCAACCCCGAAGACACTTGCTTCAGAGTGGTTGGAGTGTTTTTGTCAGCTCCAAAAGGCTTGTTGCGGGGGATGCGTTTATTTTTCTTAGaggtgagaatggggaacttcgtgttggtgtccgaagagcaatgagacagcagggtaatgttccatcgtcagttatctccagccACAGCATGCACCTCGGGGTCCTTGCAACCGCTTGGCATGCCATCTTGACGGGGACCATTTTCACTGTTTACTACAAGCCCAGGACCAGTCCCGCTGAATTTATTGTTCCGTATGATCAATACATGGAGTCTCTCAAAAATAATTATAGCATTGGGATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCCCCAGAGCAGAGGTTTACTGGTACGATTGTTGGAATAGAAGATTCTGATCCCAAAAGATGGAGAGATTCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACACGCCTCGTCCCGATAGAGTTTCCCCGTGGAAAATTGAACCAGCTCTTGCTCCTCCAGCTCTGAATCCTCTTTCAATGCCCAGGCCCAAAAGGCCTCGGGGTAATGCAGTTCCTTCATCCCCAGATTCTTCTGTTCTTACTCGAGAAGCAACATCTAAAGTAAGCATAGACCCTTCACCAACAAATGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCAGAAAGCAATGAGTCTGATACTGCTGAGAAGTCAGTTGTTTGGCCACCTACAGTAGATGATGAAAAGATCGATGTTGTTTCTACTACTTCAAGAAGGTATGGTTCAGAGAGCTGGATGTCAATGGGGAGGAATGAGCCTACATATTCTGATCTTCTTTCAAGCTTTGGGGCTAGTGGGGATCAAATGAGCCCTGTAGCTTATACAGCTAGAAAGCAATCATTGGATCATGAAGGCAAACTTCATGTGCCTCATCCGTGGCCTGTAATGCCCTCTAATCTGTCACTGAACATCTTGGACTCTAATACAAAAGGTCCTGCACATGGTGGTGATACAACTTACCAAGCTCGAGGGAATTTGAGGTACAGTGCATTTGGTGAATACGCTGCACTGCATAGTCATAAAGTTGAGCATTCACATGGAAACCTGATGCCACCCCCACCCGCACCCGTAACTCAATATCAGAGTCCTTGTTCTAGAGAGCTTATGTCAAAACCAGTGTCAGCAAAAGCTTATGATGCTACGAAACCAAAAGATGGTGACTGTAAGCTATTTGGTATCTCACTTATCAGTGGCCCCGCTGTATCAGAGCCTTCTGTATCACAAAGAAATGTGAGCGAGCCTGCTGATCAGATGCATCTGACACCACACCAACAAAGAACATCTGAAAATGATCAGAAGTCAGACCACTCAAAGGGCTCAAGACCTGCCGAGGATCTAGAGACTTCTCAGGTGCATATGAAAGATGTTCAAGCTAAACCTCTCGGTGGTTCCGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGCATTGCACTTGGTAGGTCAGTGGACCTCACAAAGTACAGCGGCTATGATGAATTAGTTGCTGAATTGGACCAGCTGTTTGATTTTGGGGGTGAATTATTGTCTACTAAAAAGGATTGGCTTATTGTTTATACTGATAATGAAGGTGATATGATGCTTGTAGGCGACGATCCATGGCAGGAATTCTGTGCCATGGTTCGCAAAATTTATATCTACCCTAAAGAGGAGATTCAGAAAATGAGCCCGGGTACCTTGAGTTCAAGAAATGAAGACAGCCAGCCGGCTACGGCTAGTGAAGGTGCAGATGCTAAAGATGTTAAATATCAGCAGCATCAAAAGTTCAATTCAGAAAATGGCCTTGACGCTTAA 2478 0.46 MASSEVTMKGNCISHNDGGTAEPHSPKDAEAALFRELWHACAGPLVTVPRERERVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQDENAVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPKRWRDSKWRCLKVRWDETSNTPRPDRVSPWKIEPALAPPALNPLSMPRPKRPRGNAVPSSPDSSVLTREATSKVSIDPSPTNGFPRVLQGQEFSTLRGNFAESNESDTAEKSVVWPPTVDDEKIDVVSTTSRRYGSESWMSMGRNEPTYSDLLSSFGASGDQMSPVAYTARKQSLDHEGKLHVPHPWPVMPSNLSLNILDSNTKGPAHGGDTTYQARGNLRYSAFGEYAALHSHKVEHSHGNLMPPPPAPVTQYQSPCSRELMSKPVSAKAYDATKPKDGDCKLFGISLISGPAVSEPSVSQRNVSEPADQMHLTPHQQRTSENDQKSDHSKGSRPAEDLETSQVHMKDVQAKPLGGSARSCTKVHKKGIALGRSVDLTKYSGYDELVAELDQLFDFGGELLSTKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSRNEDSQPATASEGADAKDVKYQQHQKFNSENGLDA 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00280 825 Pfam AUX/IAA family 736 782 IPR033389 -
Cca03g00280 825 MobiDBLite consensus disorder prediction 655 681 - -
Cca03g00280 825 Gene3D - 302 372 - -
Cca03g00280 825 Gene3D - 136 241 IPR015300 -
Cca03g00280 825 ProSiteProfiles B3 DNA-binding domain profile. 139 241 IPR003340 GO:0003677
Cca03g00280 825 MobiDBLite consensus disorder prediction 784 825 - -
Cca03g00280 825 ProSiteProfiles PB1 domain profile. 695 777 IPR000270 GO:0005515
Cca03g00280 825 SMART B3_2 139 241 IPR003340 GO:0003677
Cca03g00280 825 Pfam B3 DNA binding domain 139 240 IPR003340 GO:0003677
Cca03g00280 825 MobiDBLite consensus disorder prediction 630 654 - -
Cca03g00280 825 Pfam Auxin response factor 265 347 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca03g00280 825 MobiDBLite consensus disorder prediction 784 799 - -
Cca03g00280 825 CDD B3_DNA 137 239 IPR003340 GO:0003677
Cca03g00280 825 SUPERFAMILY DNA-binding pseudobarrel domain 135 268 IPR015300 -
Cca03g00280 825 Gene3D - 692 784 - -
Cca03g00280 825 PANTHER AUXIN RESPONSE FACTOR 2 22 802 - -
Cca03g00280 825 MobiDBLite consensus disorder prediction 353 421 - -
Cca03g00280 825 MobiDBLite consensus disorder prediction 1 27 - -
Cca03g00280 825 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 802 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca03g00280 825 MobiDBLite consensus disorder prediction 392 421 - -
Cca03g00280 825 MobiDBLite consensus disorder prediction 630 695 - -
Cca03g00280 825 SUPERFAMILY CAD & PB1 domains 698 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00280 Cca-Chr3 4175482 4180588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00280 1 810 B3 DNA Binding Superfamily AT5G62000 63.879 0.0 1059
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca03g00280 B3 1.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00280 - - gmx:100797082 1535.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00280 03 4175482 4180588 Cca03g00280 03 4175482 4180588 ECH
Cca09g02358 09 48931353 48937153 Cca03g00280 03 4175482 4180588 PCT
Cca03g00280 03 4175482 4180588 Cca11g01722 11 41746415 41748533 PCT