Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00279 ATGAATTTCTCAAAACTCAACGACTCACCCATGTTCCGGCAACAGCTCCAGTGCATGGAAGAAAGTTCAGAATCGTTACGCTCGAGATGTTTCAAGTTCTACAAAGGATGTCGAAAGTACACGGAAGGGCTTGGAGAGGCATATGATGGAGACATTGCATTTGCAAGTGCCCTTGAAAGTTTTGGAGGAGGGCATAGTGATCCTTTATTTGTAACTTTGGGAGGACCTGTTATGACCAAATTTTCTATTGCTTTAAGAGAAATCAGTACATACAAGGAACTTCTTCGGTCACAGGCGGAGCACGTGCTGAATGATCGGTTACTAAACATGCTAAACGTCGATATGTTAGATGTTAAGGAAGCTCGAAGGCGTTTTGAGAAAGCTTCCCTTGTATATGATCAGGCACGTGAGAAGTTTATGTCATTGAGAAAAAGCACTAGGATGGATATTGCCACTGTTGTAGAAGAGGAATTGCACAATGCAAGAAGCTCATTTGAGGAAGCTCGTTTCAATCTGGTTAGTGCTCTTCATAATGTTGAGGCCAAGAAGAGATTTGAGTTTTTGGAGGCTGTCACTGGAGTTATGGATGCTCATCTTCGGTATTATCGTCAGGGATATCAGCTATTACATGAGCTGGAGCCTTTTATTATTGAGGTTTTGGCTTATACACAAAAAGCAAGAGAAAGTTACAATGACGAGCAGATTAGTCTTTGTGAAAGAATGTTGGAGTACAAAAAACACGTTCATCATGAAAGCATGTTGTCCTTGAATGGCCCTTATATCTCTCCCCGTGGTGATGGGAATCCAGTGCAGCCTTTTTCTAGGATATCAAATACAGTGGCAGATGCTGTAACAGAATCTGCTGAAAATGGAAAGGTTCAAATCCTTCGCCAAGGATATCTCTCTAAACGATCCTCAAATTTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGCCGCGGAATGCTTTACTACTTTAGGAAACCATGGAACGGATTACATAGTAGCAATCAAGCATCTGTACACAGAAATTGTGCCGCTGATAATAGTGCTGGAATTTTGAGTCGCCTGCTTTCTTCACATAACCATGGACTTCTGCTCCCTGATGAAAAATCTGTAGCACGTCATACAGTGAACCTGCTCACATCAACAATCAAGACTGATGCTGAACAGACTGATTTAAGGTTCTGTTTCAGGATTATTTCACCAGCAAAGAGTTATACGTTGCAGGCAGAAAATGCCGTTGACCAGATGGATTGGATGGAAAAGATAACTGGCGTAATTGCCTCCTTATTAAGTGCACAGACACTGACAGATGACTCAGAAAGTGGTTATTGTTACTCTGCGAGCAACCTTTATTTGTTAAAAGGTCCAGATGATGATCGTTCAGGGAGTGGGGATTTTATAAAAAATGAAAAGCCAATTGATGTTCTTAGAAAGGTTGGCGGGAATGACAAATGTGCTGATTGTGGCAAACCTGACCCTGATTGGGCATCCTTAAACCTTGGCATCCTTGTATGCATCGAATGTTCCGGTGTTCACCGTAATCTTGGTGTACATTTATCAAAAGTAAGATCACTGACACTTGATGTAAAAATATGGGATTCCTCTGTCTTGACAATGTTTCAGTCACTGGGGAATCTCTTTGCAAACTCAGTGTGGGAAGAACTGTTGCATTCATCAAGTACTTCCCAAACTGATGAAACTCTTGATGGTTCATCCAAGCCACAGAGAAAGTTATTTCATGCGAGAAAACCATCACATGACGACCCTATTTCACTAAAGGAGAGGTTCATCCATGCAAAGTATTCTGCGAAAGTCTTTGTTCGCCAGACACCCAACAACAACCGTCTGCTTTCGACGGCACAACAGGTGGTAGAAAGCATCAGTGCCAATGACAAGAAAGCAGTGTACCGGCACATTATCAAATCAGATGTTGATGTCAATGCCATTAGTAGTGAAGTTATATATGGGTTTTGTACTAGCATGCCTTCTTCACCTAATCCAAACATGTCATATGAAAGTAAAACTCAACTAGCTAAGGACATACAAGATGGTTCTAGTGTGCTTCACCTGGCATGCCTAACAAGTGACGCTGCAATGGTGGAGATGCTCCTACACTATGGAGCAGATGTAAATGCTATTGACTCTAAAGGGAGGACACCACTACATTACTGCATTATGAGAGGGAAGACTGCAAATGCAAGAGTTCTTATTACAAGGGGGGCCAATCCCAATGCCGTAGACAAAGAAGGCAAAACTCCTCATAAGCTTGCACCAGAACCTGACACTGTTGGCAAAGATATTCTTAACAAGCAAATAGCATGCCCCCAAGACTCAATGGAAAAATGA 2358 0.4194 MNFSKLNDSPMFRQQLQCMEESSESLRSRCFKFYKGCRKYTEGLGEAYDGDIAFASALESFGGGHSDPLFVTLGGPVMTKFSIALREISTYKELLRSQAEHVLNDRLLNMLNVDMLDVKEARRRFEKASLVYDQAREKFMSLRKSTRMDIATVVEEELHNARSSFEEARFNLVSALHNVEAKKRFEFLEAVTGVMDAHLRYYRQGYQLLHELEPFIIEVLAYTQKARESYNDEQISLCERMLEYKKHVHHESMLSLNGPYISPRGDGNPVQPFSRISNTVADAVTESAENGKVQILRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYFRKPWNGLHSSNQASVHRNCAADNSAGILSRLLSSHNHGLLLPDEKSVARHTVNLLTSTIKTDAEQTDLRFCFRIISPAKSYTLQAENAVDQMDWMEKITGVIASLLSAQTLTDDSESGYCYSASNLYLLKGPDDDRSGSGDFIKNEKPIDVLRKVGGNDKCADCGKPDPDWASLNLGILVCIECSGVHRNLGVHLSKVRSLTLDVKIWDSSVLTMFQSLGNLFANSVWEELLHSSSTSQTDETLDGSSKPQRKLFHARKPSHDDPISLKERFIHAKYSAKVFVRQTPNNNRLLSTAQQVVESISANDKKAVYRHIIKSDVDVNAISSEVIYGFCTSMPSSPNPNMSYESKTQLAKDIQDGSSVLHLACLTSDAAMVEMLLHYGADVNAIDSKGRTPLHYCIMRGKTANARVLITRGANPNAVDKEGKTPHKLAPEPDTVGKDILNKQIACPQDSMEK 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00279 785 ProSiteProfiles Ankyrin repeat region circular profile. 687 718 - -
Cca03g00279 785 ProSiteProfiles Ankyrin repeat profile. 720 752 IPR002110 GO:0005515
Cca03g00279 785 Pfam Ankyrin repeats (3 copies) 684 751 IPR002110 GO:0005515
Cca03g00279 785 CDD BAR_SFC_plant 15 215 IPR035670 -
Cca03g00279 785 SUPERFAMILY BAR/IMD domain-like 6 317 IPR027267 -
Cca03g00279 785 SMART arf_gap_3 474 618 IPR001164 GO:0005096
Cca03g00279 785 ProSiteProfiles Ankyrin repeat profile. 687 719 IPR002110 GO:0005515
Cca03g00279 785 PRINTS HIV Rev interacting protein signature 486 505 IPR001164 GO:0005096
Cca03g00279 785 PRINTS HIV Rev interacting protein signature 505 522 IPR001164 GO:0005096
Cca03g00279 785 PRINTS HIV Rev interacting protein signature 528 549 IPR001164 GO:0005096
Cca03g00279 785 ProSiteProfiles ARF GTPase-activating proteins domain profile. 474 618 IPR001164 GO:0005096
Cca03g00279 785 SUPERFAMILY PH domain-like 295 444 - -
Cca03g00279 785 MobiDBLite consensus disorder prediction 566 590 - -
Cca03g00279 785 MobiDBLite consensus disorder prediction 747 771 - -
Cca03g00279 785 CDD PH_ACAP 297 435 - -
Cca03g00279 785 Gene3D - 622 775 IPR036770 -
Cca03g00279 785 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Cca03g00279 785 ProSiteProfiles Ankyrin repeat region circular profile. 720 752 - -
Cca03g00279 785 CDD ArfGap 477 605 - -
Cca03g00279 785 Gene3D - 286 446 IPR011993 -
Cca03g00279 785 PANTHER CENTAURIN/ARF 1 441 IPR045258 GO:0005096
Cca03g00279 785 PANTHER CENTAURIN/ARF 469 772 IPR045258 GO:0005096
Cca03g00279 785 SMART PH_update 295 433 IPR001849 -
Cca03g00279 785 Pfam BAR domain of APPL family 6 233 - -
Cca03g00279 785 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Cca03g00279 785 Coils Coil 118 138 - -
Cca03g00279 785 Gene3D Arf GTPase activating protein 463 618 IPR038508 -
Cca03g00279 785 SUPERFAMILY Ankyrin repeat 634 762 IPR036770 -
Cca03g00279 785 SUPERFAMILY ArfGap/RecO-like zinc finger 473 613 IPR037278 -
Cca03g00279 785 MobiDBLite consensus disorder prediction 574 590 - -
Cca03g00279 785 Pfam PH domain 296 430 IPR001849 -
Cca03g00279 785 ProSiteProfiles PH domain profile. 294 431 IPR001849 -
Cca03g00279 785 Pfam Putative GTPase activating protein for Arf 477 612 IPR001164 GO:0005096
Cca03g00279 785 SMART ANK_2a 687 716 IPR002110 GO:0005515
Cca03g00279 785 SMART ANK_2a 720 749 IPR002110 GO:0005515
Cca03g00279 785 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 469 772 - -
Cca03g00279 785 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00279 Cca-Chr3 4153000 4159575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00279 486 612 C2H2 Transcription Factor Family AT4G21160 42.188 3.94e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00279 K12489 - gmx:100797073 1331.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00279 03 4153000 4159575 Cca09g02357 09 48890935 48910954 ECH
Cca03g00279 03 4153000 4159575 Cca03g00279 03 4153000 4159575 ECH
Cca09g02357 09 48890935 48910954 Cca03g00279 03 4153000 4159575 PCT