Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00276 ATGCCTTCTGAAATTATGGAGAATAGGGGTGTTTCTGTCTCATCCCATTATTTGGATGACATTTCCTATGCTTCTGAGAAGAATATTGGAATTCGGAAGCCTAAATCTATTCATGCCCATTTTCTACAAGGGATGAATGAAATGGAAGCATCACCTGGCAGCATTTTGAATACTTCATCACCCCTTGAAACAAATGCTAAAACAGGCTTGCCAATGTCTCAGAATCTATCTGGGGAAATTACAGAAGACCTACATTTTGGAGGAGAAGCAGGCTCTAAAGACATGCTGAAGGATTCCAGGGAATCATTGAATTATCAAAAGATATCATGGTCTACTGTGCAGAGGCAGCCAGCATCTAGCTCACATGGTTTGATTGGGAGCAAGATTGTCACCAATGCTGCCTCACGTGAAAGTAGTCTATTTTCAAGCTCACTGTCTGAGATGTTTAGCCAAAAGTTCAGGTTAATGGGGAATGGAGGGCTGTCTGATCAACCCATTACTGTTGGTTCCCTTCCCGAGGAAGAACCATATAAATCTCTTGAAGAAATTGAGGCTGACACTATTGGAAATCTCCTTCCCGATGAAGATGATTTGTTTTCTGGAGTCACTGATGAGTTAGGATGCAATACCCACACAAGAACAAGTGATGATTTTGAAGATTTTGATTTGTTCAGCAGCGGTGGAGGCATGGAGTTGGAAGTAGATGAACATCTAGTTTCCGGAAAAAGAACTAGTTGTGTGGAGGGAAATCTTGAGTACTTTGGAGTTTCTGAGGGAAAAATTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAACGTAGAAGACTCTGAGCTAAAAGCACTCTTTGAGCAATATGGAGATATCCGAAACATATATACTGCCTGCAAGCATCGTGGGTTTGTTATGATTTCTTATTTTGACTTAAGGGCGGCACAAAATGCTATGAAAGCACTTCAAAATAGATCATTGAGATCTAGGAAACTTGATATACATTATTCAATTCCAAAGGACAATGCTCCGGAGAAGGATATTGGCCATGGTACACTGATGATATCTTGTCTTGATTCATCTGTTTTGAATGATGAACTTAAACAGATATTTGGATTTTATGGAGAGATTAAAGAAATCTATGAATATCCACAATTGAATCATGTCAAATTTATTGAATTTTATGATGTCCGAGCTGCCGAAGCTTCCCTTCGTGCTCTGAATGGGACCTGCTTTGCTGGGAAGCACATCAAGCTTGAACCTGGCCCTCCTAGGATTGCAACATGtaTGATGCAGCAGTCTCAGAAGGGACAAGATGAACCTGATCTTGGTCATAATCTGAGTGACAACTTTTCCTTAAGACATAAGGCAGGAGTGTCATCTGGATTTATTGCTTCTGGTGGCGGCTTGAAAAATGGATATAATCAGGGATTTCATTCCGCAACACGACTACCTTTGAATGCTTTTGTTGATAACTCATTGTTTCATATGAATTCTAGCATGCACAAGACCACAAGAGGGGCATCTGCTGGAAAAGCATCTGGTGTTTGTGAGGCCAGTAACACTATTGATGCATTGAAATTTGCATCTAGGTTCCATCCCCATTCTTTACCTGAATATCGGGATAGTTTAGCTAATGGAAGTCCTTATAGCTTTTCAAGTACCATTAACATGGCTTCCAATATTGGAACTGGATCAACAGAATCAGCTGACAGCAGGCACATTCAGGGAATGAGCTCAACTGGGAATCTAACAGAGTTTAATGCAGGAGGAAATGGGAGCCACCCCCATCATGGACTTTATCATATGTGGAATGGCTCCAGCTTGCATCAGCAATCTCCATCAAATGCCATGGTTTGGCAGAAAACACCATCCTTTGTTAATGGTGCTTGTTCTCCATGTCTTCCACAGATACCAAGCTTTCCTAGAACACCGCCTCATGTGCTGAGAGCATCACATATAGACCATCAAGTGGGATCAGCACCAGTTGTTACAGCCTCGCCATGGGAAAGACAGCATTCCTACTTGGGAGAGTCACCTGACACTTCTGGTTTTAGATTGGGTTCTGTAGGAAGTCCAGGTTTTCATGGTGGCTGGCAGTTGCATCCTCCGGCTTCTCACAACATATTTTCTCATGTTAGTGGGAACGGTACAGAATTGACATCAAATGTTGGGCAGGGCTCTCCTAAGCAGTTGTCACATGTTTTTCCTGGGAGACTTCCCATGACTTTGGCTTCTAAACTTGATTCTACCAATGAACGAATGAGAAACCTCTATCCTCGTAGAAGTGAACCAAACGCTAACAACAATACTGATAAAAAACAATATGAACTTGACTTGGGCCGCATTTTGCGTGGGGAAGACAACCGGACAACACTGATGATAAAAAATATTCCCAATAAGTATACATCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTACGCATTCATCAATATGATTGATCCTGGTCAAATTATTCCATTCCACAAGGCTTTTAATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCCGTACTTGCCTATGCCCGAATTCAAGGAAAAGCTGCTCTTATTGCTCATTTTCAGAATTCAAGCCTGATGAACGAAGATAAACGTTGCCGCCCTATTCTCTTCCATACAGATGGCCCAAATGCTGGTGATCCGGTAATCAGCATGTTCTTTTGTTGTGACTATTTTCCTTTTGCCAACTACAATGAATTATGGAACTACTATAGTACCCGACTACTAGTATTCCTCTCTGATATTTTGCTTTGTAAATATGATTTTATTGATGTTTGCATTAATGTTTTGGGTTGA 2898 0.4089 MPSEIMENRGVSVSSHYLDDISYASEKNIGIRKPKSIHAHFLQGMNEMEASPGSILNTSSPLETNAKTGLPMSQNLSGEITEDLHFGGEAGSKDMLKDSRESLNYQKISWSTVQRQPASSSHGLIGSKIVTNAASRESSLFSSSLSEMFSQKFRLMGNGGLSDQPITVGSLPEEEPYKSLEEIEADTIGNLLPDEDDLFSGVTDELGCNTHTRTSDDFEDFDLFSSGGGMELEVDEHLVSGKRTSCVEGNLEYFGVSEGKIPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRNIYTACKHRGFVMISYFDLRAAQNAMKALQNRSLRSRKLDIHYSIPKDNAPEKDIGHGTLMISCLDSSVLNDELKQIFGFYGEIKEIYEYPQLNHVKFIEFYDVRAAEASLRALNGTCFAGKHIKLEPGPPRIATCMMQQSQKGQDEPDLGHNLSDNFSLRHKAGVSSGFIASGGGLKNGYNQGFHSATRLPLNAFVDNSLFHMNSSMHKTTRGASAGKASGVCEASNTIDALKFASRFHPHSLPEYRDSLANGSPYSFSSTINMASNIGTGSTESADSRHIQGMSSTGNLTEFNAGGNGSHPHHGLYHMWNGSSLHQQSPSNAMVWQKTPSFVNGACSPCLPQIPSFPRTPPHVLRASHIDHQVGSAPVVTASPWERQHSYLGESPDTSGFRLGSVGSPGFHGGWQLHPPASHNIFSHVSGNGTELTSNVGQGSPKQLSHVFPGRLPMTLASKLDSTNERMRNLYPRRSEPNANNNTDKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHKAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPVISMFFCCDYFPFANYNELWNYYSTRLLVFLSDILLCKYDFIDVCINVLG 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00276 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 342 IPR000504 GO:0003723
Cca03g00276 965 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 915 - -
Cca03g00276 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 427 IPR000504 GO:0003723
Cca03g00276 965 CDD RRM3_MEI2_like 796 881 IPR034454 -
Cca03g00276 965 CDD RRM1_MEI2_like 268 344 IPR034453 -
Cca03g00276 965 Gene3D - 352 454 IPR012677 -
Cca03g00276 965 Pfam RNA recognition motif 2 793 889 IPR007201 -
Cca03g00276 965 Gene3D - 263 351 IPR012677 -
Cca03g00276 965 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 915 - -
Cca03g00276 965 SMART rrm1_1 270 338 IPR000504 GO:0003723
Cca03g00276 965 SMART rrm1_1 355 423 IPR000504 GO:0003723
Cca03g00276 965 SMART rrm1_1 795 873 IPR000504 GO:0003723
Cca03g00276 965 SUPERFAMILY RNA-binding domain, RBD 266 424 IPR035979 GO:0003676
Cca03g00276 965 SUPERFAMILY RNA-binding domain, RBD 795 880 IPR035979 GO:0003676
Cca03g00276 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 421 IPR000504 GO:0003723
Cca03g00276 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 335 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00276 Cca-Chr3 4047853 4056175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00276 264 420 Eukaryotic Initiation Factors Gene Family AT3G16380 26.404 3.93e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00276 - - gmx:100797616 1597.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00276 03 4047853 4056175 Cca09g02353 09 48837052 48844996 ECH
Cca03g00276 03 4047853 4056175 Cca03g00276 03 4047853 4056175 ECH
Cca09g02353 09 48837052 48844996 Cca03g00276 03 4047853 4056175 PCT