Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00275 CTTGACGAAGCAGAAAAAAGGTTGCAAGATTCTGAATCTAAATTGGCTCGCCTTCGGGGTCAAACTAATGCAGTGTCGTCTAGAAGTGCCGTAGAAGATGGAATCAAAACTGTGAAAACAGAGCGCAGATCAATCAGTCCCATTGATAGAAATGGAGGTTCTGCCAAAAACCAACCTCAATCTAAAACAGAACTTGTTATTCCTTCAGTGAATCCAAAAATTTCACAACCTGTACTGTTGCCAAGGTCTTCTGCAAAAGCTTCAATAAGTTCCAGTTCTGAAGCCACTCCAGGAGTCCATAATTCTCCAATCACTGGTGGTAGCTCTAGGGGAAAACCTGACAAGTCTCATGGTCATAGACTTTCTTCGGAGCAGCAAAATTCTGAAAACAAGGACAAAGGGACAAAAAGGAAGTTTGAACAAAAAGAACACAAGGAATTGATTCCTTTAATACGCAAGAGTTCTTCACCAAGCTTGGTACACTGTCAAACAAGCAACCACATCTCAAGTCAACACAAGAGGAAATTGCGGAGTATTGCTTTGTGTCCCGTGAATGATCAGCTTTTTGTGACCAGtgctctggatggagtggtcaacttgtggcaagttcaggctaagggagcaggagcctctcgtcttagcactactgattgtgcatcccaaaagcagaggagatggccagaagatttagtctggcacccagaaggaaacagtctattttcagtatacagtgctgatagtggagactctcaagtatcaattacaaatctgaataaaggacaagGGGGAGATCGTGTAAAATTCTTAGAGGACaagcctcatgttaagggaattatcaatggcattgtttttatgccctgggaaaatacatgttttgtaactgctggaagtgaccatgctgttgtactttggagtgagcaggatggtgagaacaagtggaagccaaaagcattgcacaggaaccttcactcttctgctgtcatgggagttgctggtatgcagcagaagcaggtggtgttgtctgttggtgcagacaggagaatATTTGGGTATGATGTTCGTGTAGGAAGAGCAGATTTCAAGCATCAGGTTGATAGTAAATGCATGAGTGTCCTGCCCAATCCACGTGACTTCAATTTATTCATGGTTCAAACAGGGACCCATGAGAAGCAGCTTCGATTATTTGATATTAGATTGAGGAATACAGAGCTTCATGCTTTTGGATGGAAGCAAGAAAGCAGTGAATCTCAATCGGCTCTGATAAATCAGGCTTGGTCTCCTGATGGACTTTATATAACATCTGGTTCTGCAGATCCTGTGATTCACATATTTGATATAAGGTACACTGCTCACAAGCCTTCCCAATCTATAAGAGCGCATCAGAAACGAGTCTTCAAAGCCATGTGGCTTCAGTCTATTCCTCTTGTCATTTCCATATCATCTGATCTTAACATTGGACTGCACAAGGTCTTGAGCGATTCAATGGAAGCTGTAGATGAGGGTGTGGACATTCAGGAAAATCTTTCTGGCTTTATTTTCATGTGTAATAGAATTACAAAGCCAGAGTGCTACCGGTACCGAGTTTTTGGGCTTCCTTCCGGAAGAATGGAAGTTGTAGAGAAGATCAATCATGGTACTTACCTTTTTCTGTTTGACACTGATGTGAAGCTTCTGTATGGCATATATATGGCAACCTCAACTGGGAAGCTTAGGATAGAACCATTAGCTTTTGGTCAGAAATTCCCTGCTCAGGTGAAATTCAAAATTTACAAAGACTGTTTACCCTTGCCAGAGAACTGCTTTAAACATGCCATTCAAGATAATTACCAGAAAGGCTCCAACAAATTTAATCCTGAACTCAATATTACGCAAGTAAGAAGTCTATTAGAATTGTTTCGCCCATTACATTCATTGCGAACTGCACCTACACAACCTTTTTTGAAGAAACCAATGAATAATCTTTATCATCAGATATCAGGGCCACCCCTTTCTGAGAATGCATTTTTGTCTAGGATGTCACCCACTCGAGCTCCAAGGCTGTGGAACTATAAACATGTAAATGAACTCAGGGAGCCTACGGCTTGTGCCTATCCTGTTCATAATGTTACGCCTTATTCAGCTGCAGCACAGCCTGTGTCATCACAAGCTTCAAGGAATCAGTTTTATTCTCTGGAGGGTAGTTATGCACCTGGGATGGGCACCAGTCATACAAGATCACTACCAGATTCTCAATATTCACATCAGACTATCCTTAACCCACAACCTGAATTTCATTCATCCCCGGTGAACAAGGGTAGTGGTCATGCTCAGTCTTTGCAAGATTTTCAACATGCACATCACAATATCATACACCAACAAACTGAATTTCATTCTTCATTGTTGACTGTTGGTAACAGTCATACTCTATCACGGCAATATCCTCAATATCCATATCAGATTATCCCAAACCCATCACATGATTTTCATTCCCCAGCGGCAAATGCAGGCAGCAGTCATCAGAGTCATCCCCACTTGTCATGGGGTCCTCACTATACCCATCAGAATATCCCAAACTTGCAACCTGACGCTTACTCCACCTTGGCGAATACAGGCAACTGTTATGCTCAATTATTGCCAGATCCTCAGCATACACATCAGAATGCCCAAAATCCTCAACCTGATCTCAATTCTTCCTTGGTGAATATGAGCCATGTCAGTGTCACGATGCAACCGCATGCTTTGTCATCATCATATTATCCATATGTTCCTCAAGAAGTTGTATATTCCGCGTCTTCATCGCAAGGGTCTGGAGCCATACAAGGGGTGATATCAAGTGATCAACAAAATGGAACTGGAAGCGAGTATTATCAGCCATCTATGTAG 2862 0.3536 LDEAEKRLQDSESKLARLRGQTNAVSSRSAVEDGIKTVKTERRSISPIDRNGGSAKNQPQSKTELVIPSVNPKISQPVLLPRSSAKASISSSSEATPGVHNSPITGGSSRGKPDKSHGHRLSSEQQNSENKDKGTKRKFEQKEHKELIPLIRKSSSPSLVHCQTSNHISSQHKRKLRSIALCPVNDQLFVTSALDGVVNLWQVQAKGAGASRLSTTDCASQKQRRWPEDLVWHPEGNSLFSVYSADSGDSQVSITNLNKGQGGDRVKFLEDKPHVKGIINGIVFMPWENTCFVTAGSDHAVVLWSEQDGENKWKPKALHRNLHSSAVMGVAGMQQKQVVLSVGADRRIFGYDVRVGRADFKHQVDSKCMSVLPNPRDFNLFMVQTGTHEKQLRLFDIRLRNTELHAFGWKQESSESQSALINQAWSPDGLYITSGSADPVIHIFDIRYTAHKPSQSIRAHQKRVFKAMWLQSIPLVISISSDLNIGLHKVLSDSMEAVDEGVDIQENLSGFIFMCNRITKPECYRYRVFGLPSGRMEVVEKINHGTYLFLFDTDVKLLYGIYMATSTGKLRIEPLAFGQKFPAQVKFKIYKDCLPLPENCFKHAIQDNYQKGSNKFNPELNITQVRSLLELFRPLHSLRTAPTQPFLKKPMNNLYHQISGPPLSENAFLSRMSPTRAPRLWNYKHVNELREPTACAYPVHNVTPYSAAAQPVSSQASRNQFYSLEGSYAPGMGTSHTRSLPDSQYSHQTILNPQPEFHSSPVNKGSGHAQSLQDFQHAHHNIIHQQTEFHSSLLTVGNSHTLSRQYPQYPYQIIPNPSHDFHSPAANAGSSHQSHPHLSWGPHYTHQNIPNLQPDAYSTLANTGNCYAQLLPDPQHTHQNAQNPQPDLNSSLVNMSHVSVTMQPHALSSSYYPYVPQEVVYSASSSQGSGAIQGVISSDQQNGTGSEYYQPSM 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00275 953 SUPERFAMILY WD40 repeat-like 174 490 IPR036322 GO:0005515
Cca03g00275 953 Gene3D - 362 507 IPR015943 GO:0005515
Cca03g00275 953 SMART WD40_4 156 202 IPR001680 GO:0005515
Cca03g00275 953 SMART WD40_4 408 445 IPR001680 GO:0005515
Cca03g00275 953 SMART WD40_4 262 305 IPR001680 GO:0005515
Cca03g00275 953 SMART WD40_4 450 489 IPR001680 GO:0005515
Cca03g00275 953 SMART WD40_4 312 352 IPR001680 GO:0005515
Cca03g00275 953 Coils Coil 1 21 - -
Cca03g00275 953 MobiDBLite consensus disorder prediction 732 770 - -
Cca03g00275 953 MobiDBLite consensus disorder prediction 1 143 - -
Cca03g00275 953 MobiDBLite consensus disorder prediction 112 143 - -
Cca03g00275 953 MobiDBLite consensus disorder prediction 50 109 - -
Cca03g00275 953 Gene3D - 107 361 IPR015943 GO:0005515
Cca03g00275 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 204 IPR001680 GO:0005515
Cca03g00275 953 MobiDBLite consensus disorder prediction 933 953 - -
Cca03g00275 953 SMART dcd 506 634 IPR013989 -
Cca03g00275 953 Pfam Development and cell death domain 510 632 IPR013989 -
Cca03g00275 953 MobiDBLite consensus disorder prediction 15 30 - -
Cca03g00275 953 MobiDBLite consensus disorder prediction 817 838 - -
Cca03g00275 953 MobiDBLite consensus disorder prediction 823 838 - -
Cca03g00275 953 Pfam WD domain, G-beta repeat 422 445 IPR001680 GO:0005515
Cca03g00275 953 ProSiteProfiles DCD domain profile. 506 634 IPR013989 -
Cca03g00275 953 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 1 490 - -
Cca03g00275 953 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 1 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00275 Cca-Chr3 4021707 4034522 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00275 - - gmx:100799587 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00275 03 4021707 4034522 Cca03g00275 03 4021707 4034522 ECH
Cca09g02352 09 48822171 48829659 Cca03g00275 03 4021707 4034522 PCT