Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00272 ATGGCCCCGGCGGCGTTCCACCCCGCGAGGGCGGCGGCGCCGCGCGAGCTCGGGGGGCTGGAGGAGCTCTTCCAGGCGTACGGCATCCGGTACTTCACGGCGGCGAAGATCGCCGAGCTAGGGTTCACGGTGAGCACGCTGGTGGACATGAAGGACGAGGAACTCGACGACATGATGAACAGCCTCTCCCAGATTTTCCGTTGGGACCTCCTCGTCGGCGAGCGCTACGGCATCAAAGCCGCCGTCAGAGCCGAGCGCCGCCGTGTCGACGATGACGACCTCAAGCGCCGCAGTAACAACCTCCTCTCCGCCGACACCACCACCAACGCCCTCGACGCCCTCTCTCAAGAAGGTTTATCAGAGGAACCGGTGGTGCAACGAgagaaggaggcggtggggagtgggggagggagcacgtgggaggtggcggcagcggaggagcggaggaagcagcagaggaggcggaggacgagAATGAAAGTGAATATTCATCACGATGAGAATGAGGATCTTGAAGaggaggaaggagaagagaacgatgaagggaaCAACAACAGTGGTGGAGGTTGCGAGAGGCAAAGGGAGCATCCATTCATCGTGACGGAGCCTGGGGAGGTTGCACGTGGGAAGAAGAACGGTTTGGATTATCTGTTCCATCTCTACGAGCAGTGCCGTGAGTTCTTGATGCAGGTTCAGGCCATTGCCAAGGATCGCGGTGAAAAATGCCCCACCAAGGAGTGCGTGCAGGTGACAAATCAGGTGTTTAGGTATGCGAAGAAAGCTGGGGCGAGCTACATCAACAAGCCGAAGATGCGACACTACGTTCACTGCTACGCTTTGCATTGCCTGGACGAGGAGGTTTCGAACGAGCTTCGGAGGGCGTTCAAGGAGAGAGGGGAGAACGTGGGTGCGTGGAGGCAAGCGTGTTACAAGCCCCTTGTGGCCATCGCAGCGCGTCAAGGTTGGGACATTGATGCCATATTCAATGCGCACCCTCGTCTTTCCATATGGTACGTTCCTACGAAGCTCCGTCAGCTTTGTCACGCCGAGAGGAACAGCGCCGCCGCGTCGAGCTCCGTGTCTGCCGGCAGCGCTCACCTTCCCTTCTGA 1110 0.5225 MAPAAFHPARAAAPRELGGLEELFQAYGIRYFTAAKIAELGFTVSTLVDMKDEELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRVDDDDLKRRSNNLLSADTTTNALDALSQEGLSEEPVVQREKEAVGSGGGSTWEVAAAEERRKQQRRRRTRMKVNIHHDENEDLEEEEGEENDEGNNNSGGGCERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLMQVQAIAKDRGEKCPTKECVQVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSAAASSSVSAGSAHLPF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00272 369 MobiDBLite consensus disorder prediction 115 193 - -
Cca03g00272 369 Coils Coil 142 174 - -
Cca03g00272 369 PANTHER PROTEIN LEAFY 8 369 IPR002910 GO:0003677|GO:0006355
Cca03g00272 369 Pfam Floricaula / Leafy protein SAM domain 16 92 IPR035079 -
Cca03g00272 369 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 186 355 IPR035209 GO:0003677
Cca03g00272 369 Gene3D Protein LEAFY 188 361 IPR038276 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00272 11 353 Orphan Transcription Factor Family AT5G61850 69.832 1.24e-157 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Cca03g00272 C_LFY_FLO 3.2e-106 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00272 - - gsj:114416001 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00272 03 3973385 3975995 Cca03g00272 03 3973385 3975995 ECH