Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00248 ATGAAAGAACACTGCATGGAGCCTTTTTTTGTATTTCAGGTTTTCTGTGTGGGTCTCTGGTGTTTGGATGAATATTGGTATTACAGTTTGTTCACTCTATTTATGCTGTTTATGTTTGAGTCAACCATGGCAAAAAGTCGGTTAAAAACTCTAACCGAGTTAAGACGTGTTAGAGTGGATAGTCAGATCGTAATGGTACATCGCTGTGGCAAGTGGGTAAAACTTTCTGGTACAGACCTTTTGCCAGGGGATGTTGTATCCATAGGTCGCTCTTCTGGTCAGAATGGGGAGGAGAAGTCTGTACCAGCAGACATGCTTCTGTTGGCTGGAAGTGTGATTGTGAATGAAGCTATTCTCACAGGCGAGTCTACTCCTCAATGGAAGATTTCAATCGCGGGTAGGGGCATGGAGGAGAAACTGTCGGCAAGGCGAGATAAAAACCATGTTTTATTTGGCGGAACTAAAATATTGCAGCACACTCCAGATAAGAGTTTTCCTCTTAAAACACCTGATGGCGGCTGCTTGGCTGTTGTCCTGAGAACGGGTTTTGAAACAAGTCAAGGAAAGTTGATGCGGACAATTTTATTCTCTACAGAAAGGGTGACGGCTAATAGCTGGGAAAGTGGATTGTTCATATTATTCTTGGTTGTATTTGCTCTTATTGCTGCTGGTTATGTGCTTATTAAGGGGCTAGAAGATCCCACAAGGAGCAAGTATAAACTTATATTAAGTTGTTCCCTTATTGTTACTTCTGTGATACCTCCTGAGTTACCTATGGAATTATCAATTGCTGTTAATACTTCTCTAATTGCACTGGCACGACGTGGAATCTTTTGCACAGAACCTTTTCGAATACCATTTGCTGGAAAAGTTGATATATGTTGTTTTGACAAGACAGGGACACTTACATCTGATGACATGGAATTTTCTGGAGTTGTTGGGTTGAATGGAACTACAGATTTGGAATCTGATGCAAGTAGAGTGCCTGTGCGAACAGTAGAAATCCTGGCTTCTTGCCATGCATTGGTATTTGTTGAGAATAAGCTGGTTGGTGATCCTCTTGAGAAGGCTGCACTCAAGGGGATTGACTGGAGTTATAAATCTGATGACAAGGCTCTTCCTAAAAAGGGAAATGGCAATCCTGTTCAAATTGTTCACCGGTATCATTTTGCATCTCACTTAAAACGAATGGCAGTTGTTGTTCGCATCCAGGAGGAATTTTTTGCCTTTGTAAAGGGTGCCCCAGAAGTTATACAAGATAGGCTCATTGATATACCACCATCATATGTTGAGACCTATAAAAAATACACACGTCAAGGGTCTCGTGTTCTTGCTTTGGCTTACAAGTCTCTTGCGGACATGACAGTCAGTGAAGCTAGAAGCATGGATAGGGATATAGTGGAGAGTGGACTTACTTTTGCTGGTTTTGTGGTATTTAATTGTCCCATAAGATCAGATTCAGCCACTATTTTATCTGAATTAAAAGAATCCTCACATGACTTGGTGATGATTACTGGTGACCAAGCTTTGACAGCTTGCCATGTTGCTAGCCAAGTTCATATTATATCAAAACCTACATTAATCCTTGGCCGAGCACGAAATGGTGATGGATATAATTGGGTGTCCCCTGATGAGACTGAAAACATTCGCTACAGTGAGAACGAGGTTGAGTCTTTATCAGAGACTCATGATCTCTGTGTTGGAGGTGATTGCATTGAAATGTTGCAACAGACATCAGCTCATCTTCGAGTCATTCCTCATGTGAAGGTTTTTGCTAGAGTTGCTCCTGAGCAAAAAGAACTTATCATGACCACTTTCAAAACAGTGGGACGGTTAACTTTGATGTGTGGGGATGGAACCAATGATGTTGGAGCTTTGAAGCAGGCCCATGTAGGAATTGCTCTTCTGAATGCATTGCCTCCAACTCAAAGTGGAAACTCCTCTTCAGATTCGTCTAAGGAAGAAGGTTCAAAATCTGTCAAACAAAAGAAATCTAAGCCTGCACTTGACACATCTGGAAAGACTGCTGGAGAAGGCACTTCAAAAGCTAAAGTTGCTTCAAAATCAGATTCCACTAGCCACTCATCTGGTAACCGTCATCAGGCAGCTGTTGAGATGCAACGACAGAAGCTTAAGAAGATGATTGATGATCTTAACGAGGAAGGAGATGGTCGTGCACCCATTGTCAAGCTTGGTGATGCCTCGATGGCATCTCCATTCACTGCTAAGCATGCGTCTGTTTCTCCTACCACTGACATAATCCGTCAAGGTCGGAGTACGCTAGTAACAACCCTCCAGATGTTTAAAATTCTGGGCCTCAACTGTCTCGCTACTGCATATGTGTTGAGTGTTATGTATTTGGATGGTGTCAAGCTAGGTGACATACAAGCCACAATAAGTGGTGTCTTCACCGCTGCATTTTTCCTCTTCATCTCACATGCACGCCCACTTCCTACTCTTTCTGCTGAACGTCCTCACCCCAACATCTTCTGTGCTTATGTTTTCCTTTCCCTCTTGGGACAATTTTCTATTCACCTGTTATTCCTGATTTCATCTGTCAAAGAAGCTGAAAAATACATGCCAGATGAATGCATTGAACCTGATGCAGATTTTCATCCCAACCTGGTGAATACTGTTTCTTATATGGTGAGCATGATGCTTCAGGTGGCTACATTTGCTGTGAACTATATGGGCCATCCCTTCAATCAGAGTATTTCTGAAAACAAGCCGTTCCGGTATGCACTTGTTGCTGCTGTCATTTTCTTTACTGTGATTACATCTGATCTCTTCAGGGACTTGAATGACTGGTTGAAGTTGGTGCCATTGCCAGTGGGATTAAGGGATAAACTGTTAATTTGGGCGTTTCTAATGTTTTTGGTTTGCTATTCGTGGGAGAGACTTTTGAGGTGGGCCTTCCCTGGTAAGATCCCAGCTTGGAAGAAGAGACAAAGGCTTGCGGTGTCTAATTTAGAAAAGAAGAAACAGGTCTAA 2991 0.4239 MKEHCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLTELRRVRVDSQIVMVHRCGKWVKLSGTDLLPGDVVSIGRSSGQNGEEKSVPADMLLLAGSVIVNEAILTGESTPQWKISIAGRGMEEKLSARRDKNHVLFGGTKILQHTPDKSFPLKTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFALIAAGYVLIKGLEDPTRSKYKLILSCSLIVTSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFSGVVGLNGTTDLESDASRVPVRTVEILASCHALVFVENKLVGDPLEKAALKGIDWSYKSDDKALPKKGNGNPVQIVHRYHFASHLKRMAVVVRIQEEFFAFVKGAPEVIQDRLIDIPPSYVETYKKYTRQGSRVLALAYKSLADMTVSEARSMDRDIVESGLTFAGFVVFNCPIRSDSATILSELKESSHDLVMITGDQALTACHVASQVHIISKPTLILGRARNGDGYNWVSPDETENIRYSENEVESLSETHDLCVGGDCIEMLQQTSAHLRVIPHVKVFARVAPEQKELIMTTFKTVGRLTLMCGDGTNDVGALKQAHVGIALLNALPPTQSGNSSSDSSKEEGSKSVKQKKSKPALDTSGKTAGEGTSKAKVASKSDSTSHSSGNRHQAAVEMQRQKLKKMIDDLNEEGDGRAPIVKLGDASMASPFTAKHASVSPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSAERPHPNIFCAYVFLSLLGQFSIHLLFLISSVKEAEKYMPDECIEPDADFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSISENKPFRYALVAAVIFFTVITSDLFRDLNDWLKLVPLPVGLRDKLLIWAFLMFLVCYSWERLLRWAFPGKIPAWKKRQRLAVSNLEKKKQV 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00248 996 SUPERFAMILY HAD-like 290 642 IPR036412 -
Cca03g00248 996 Gene3D - 290 475 IPR023299 GO:0000166
Cca03g00248 996 Coils Coil 701 721 - -
Cca03g00248 996 Gene3D - 476 651 IPR023214 -
Cca03g00248 996 MobiDBLite consensus disorder prediction 640 706 - -
Cca03g00248 996 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 301 485 IPR023299 GO:0000166
Cca03g00248 996 PANTHER CATION-TRANSPORTING ATPASE 1 987 - -
Cca03g00248 996 ProSitePatterns Hypothetical cof family signature 2. 616 638 - -
Cca03g00248 996 ProSitePatterns E1-E2 ATPases phosphorylation site. 297 303 IPR018303 -
Cca03g00248 996 PRINTS P-type cation-transporting ATPase superfamily signature 497 507 - -
Cca03g00248 996 PRINTS P-type cation-transporting ATPase superfamily signature 295 309 - -
Cca03g00248 996 PRINTS P-type cation-transporting ATPase superfamily signature 616 635 - -
Cca03g00248 996 PRINTS P-type cation-transporting ATPase superfamily signature 115 129 - -
Cca03g00248 996 SFLD Haloacid Dehalogenase 276 759 - -
Cca03g00248 996 CDD P-type_ATPase_cation 1 911 - -
Cca03g00248 996 MobiDBLite consensus disorder prediction 654 668 - -
Cca03g00248 996 Pfam E1-E2 ATPase 63 275 - -
Cca03g00248 996 Gene3D - 32 195 - -
Cca03g00248 996 Pfam haloacid dehalogenase-like hydrolase 292 520 - -
Cca03g00248 996 TIGRFAM P-ATPase-V: P-type ATPase of unknown pump specificity (type V) 1 953 IPR006544 GO:0006812|GO:0016021|GO:0019829|GO:0140358
Cca03g00248 996 MobiDBLite consensus disorder prediction 674 703 - -
Cca03g00248 996 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 987 - -
Cca03g00248 996 SUPERFAMILY Calcium ATPase, transduction domain A 62 194 IPR008250 -
Cca03g00248 996 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 210 320 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g00248 996 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 587 635 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g00248 996 SFLD p-type atpase 276 759 IPR044492 -
Cca03g00248 996 SUPERFAMILY Calcium ATPase, transmembrane domain M 3 973 IPR023298 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00248 1 996 Primary Pumps ATPases AT5G23630 78.968 0.0 1633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00248 K14950 - gmx:100789385 1880.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00248 03 3642262 3654651 Cca03g00248 03 3642262 3654651 ECH