Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00246 ATGGGTAGATCCCCCTGTTGCGAGAAGGAACACACCAACAAAGGAGCTTGGACCAAGGAAGAAGACCAACGCCTCATCAACTACATCAAACTCCACGGCGAAGGTTGTTGGAGATCCCTCCCCAAAGCTGCTGGCTTGCTCAGATGCGGCAAGAGTTGCAGACTCAGATGGATTAATTACCTCAGACCTGATCTCAAGAGAGGCAACTTCACTGAAGACGAAGATGAACTCATCATAAACCTCCACAGCTTACTCGGAAACAAGTATCTCTCCTATTATATCTTTATTTTTACTCTCCATTTTATACATAACATATACCTTTTTTTCATCTTCCTAAAAATCTTTCTTTTTTTTCTCAGATGGTCTCTCATAGCTGCAAGGTTGCCTGGGAGAACCGATAACGAAATCAAAAACTATTGGAACACTCACATCAAGAGAAAACTCTATAGCCGTGGAATCGACCCACAAACCCATCGCCCACTTAACGCTTCAGCATCTCCGGCAGCCACCGCCGCCGTTGTTCCGGTGGTAACGGTCACCTCAagcaacaacaaaaacgaccaagacagcagcagcagcaacaacaacaacaacaataacaacggttttcaGTTGGTGAGTAGCGGTTACGTTAACGCAAAGATTGGAAGCGATTTGGTTGGGGAAGATTCGAATAGTAGCAGCGGGGTTACCACGGAAGAAGCCTTGCCTCATCATCAACTCAACTTGGACCTTTCCATTGGGCTTCCCTCTCAACCCCACGTGAACACGGAAAAGTTGAAACAACAAATGCAAACACAACCACATGAGCATGATCAAAAGCCGCATGTTTTGTACCAGTGGTATGGGAACATTACTGGCCAAGGTGTGTGCCTGTGTTACAGTCTAGGGCTACAAAGCAACCAAGCTTGTTATTGCAAAGCCATGGGtgctgctgctgctgctgctgctgttactgctgctACCACTACCACTGCGGTTACTACAACTGCCACCGAGGATAATCTATATAGACTTTACAGACCCATGAATATTTAG 1038 0.4133 MGRSPCCEKEHTNKGAWTKEEDQRLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEDEDELIINLHSLLGNKYLSYYIFIFTLHFIHNIYLFFIFLKIFLFFLRWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNASASPAATAAVVPVVTVTSSNNKNDQDSSSSNNNNNNNNGFQLVSSGYVNAKIGSDLVGEDSNSSSGVTTEEALPHHQLNLDLSIGLPSQPHVNTEKLKQQMQTQPHEHDQKPHVLYQWYGNITGQGVCLCYSLGLQSNQACYCKAMGAAAAAAAVTAATTTTAVTTTATEDNLYRLYRPMNI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00246 345 CDD SANT 69 144 IPR001005 -
Cca03g00246 345 CDD SANT 16 61 IPR001005 -
Cca03g00246 345 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 120 279 - -
Cca03g00246 345 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 89 - -
Cca03g00246 345 Gene3D - 69 148 - -
Cca03g00246 345 SMART sant 66 146 IPR001005 -
Cca03g00246 345 SMART sant 13 63 IPR001005 -
Cca03g00246 345 PANTHER TRANSCRIPTION FACTOR MYB7 120 279 - -
Cca03g00246 345 PANTHER TRANSCRIPTION FACTOR MYB7 1 89 - -
Cca03g00246 345 SUPERFAMILY Homeodomain-like 119 154 IPR009057 -
Cca03g00246 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 148 IPR017930 -
Cca03g00246 345 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca03g00246 345 Pfam Myb-like DNA-binding domain 67 143 IPR001005 -
Cca03g00246 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Cca03g00246 345 MobiDBLite consensus disorder prediction 181 203 - -
Cca03g00246 345 ProSiteProfiles Myb-like domain profile. 62 144 IPR001005 -
Cca03g00246 345 Gene3D - 14 66 - -
Cca03g00246 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca03g00246 345 SUPERFAMILY Homeodomain-like 15 89 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00246 Cca-Chr3 3595214 3596703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00246 1 251 MYB Transcription Factor Family AT4G09460 52.852 5.95e-84 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca03g00246 Myb_DNA-binding 4.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00246 K09422 - gmx:100808083 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00246 03 3595214 3596703 Cca03g00246 03 3595214 3596703 ECH
Cca09g02327 09 48594909 48596562 Cca03g00246 03 3595214 3596703 PCT