Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00245 ATGGACAAGGCACGATTTGGGCTTTTCTTCGTATTGTTGATTCTCCTTGCTTCTCAGATGGTGGTAGAAACGGAGGGAAGGCACTGCGAATCAAAGAGCCATCGTTTTAAAGGGATGTGTCTAAGCGATCACAACTGCGGTTCCGTTTGCCATGTTGAAGGCTTCACAGGTGGCAAATGTCATGGATTCCGTAGACGCTGTTTCTGCACTAAGCACTGTTAG 222 0.473 MDKARFGLFFVLLILLASQMVVETEGRHCESKSHRFKGMCLSDHNCGSVCHVEGFTGGKCHGFRRRCFCTKHC 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00245 73 Pfam Gamma-thionin family 27 73 - -
Cca03g00245 73 ProSitePatterns Gamma-thionins family signature. 27 50 IPR008176 GO:0006952
Cca03g00245 73 CDD Knot1 40 70 IPR003614 GO:0006952
Cca03g00245 73 PRINTS Purothionin signature 28 43 IPR008176 GO:0006952
Cca03g00245 73 PRINTS Purothionin signature 58 72 IPR008176 GO:0006952
Cca03g00245 73 SMART gth_4 28 73 IPR003614 GO:0006952
Cca03g00245 73 Gene3D - 27 73 IPR036574 -
Cca03g00245 73 PANTHER DEFENSIN-LIKE PROTEIN 1 1 73 - -
Cca03g00245 73 SUPERFAMILY Scorpion toxin-like 27 73 IPR036574 -
Cca03g00245 73 PANTHER DEFENSIN 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00245 Cca-Chr3 3586181 3586881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00245 1 73 Plant Defensins Gene Families AT5G63660 57.534 4.63e-27 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00245 - - gmx:100788332 148.673