Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00244 ATGGTCGTCAACATGTTCAGGAAATCACTAGGcttcttcttcttgctccttctccttGTCTTTGCCTCTCAGGTGGTGGTGCAGACTGAGGGAAGATTGTGTGAGTCACAGAGCCACGGGTTCAAAGGTGCATGCACAAGTGACCACAACTGTGCTCTGGTTTGCAGGAACGAAGGTTTCTCCGGCGGCAACTGCAAAGGGTTCCGCCGCCGCTGCTTTTGCACCAAGATTTGTTGA 237 0.4726 MVVNMFRKSLGFFFLLLLLVFASQVVVQTEGRLCESQSHGFKGACTSDHNCALVCRNEGFSGGNCKGFRRRCFCTKIC 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00244 78 Gene3D - 32 78 IPR036574 -
Cca03g00244 78 ProSitePatterns Gamma-thionins family signature. 32 55 IPR008176 GO:0006952
Cca03g00244 78 PRINTS Purothionin signature 33 48 IPR008176 GO:0006952
Cca03g00244 78 PRINTS Purothionin signature 63 77 IPR008176 GO:0006952
Cca03g00244 78 SUPERFAMILY Scorpion toxin-like 32 78 IPR036574 -
Cca03g00244 78 PANTHER DEFENSIN 8 78 - -
Cca03g00244 78 CDD Knot1 43 75 IPR003614 GO:0006952
Cca03g00244 78 PANTHER DEFENSIN-LIKE PROTEIN 1 8 78 - -
Cca03g00244 78 SMART gth_4 33 78 IPR003614 GO:0006952
Cca03g00244 78 Pfam Gamma-thionin family 32 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00244 Cca-Chr3 3582262 3583263 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00244 14 78 Plant Defensins Gene Families AT5G63660 64.615 3.73e-28 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00244 - - gmx:547938 122.479