Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00242 ATGGATAAGTACGAGGCCGTTAAGGATTTGGGAGCTGGCAATTTTGGGGTCGCTAGGCTTATGAGGAACAAGCTCACCAAGGAGCTCGTAGCCATGAAATACATCGAGCGTGGCCACAAGATTGATGAGAATGTGGCAAGGGAGATTATGAACCACAGGTCCCTCCGGCATCCCAATATAATTCGTTACAAGGAGGTGGTTTTGACTCCCACGCATTTGGCAATAGTGATGGAGTATGCAGCAGGAGGAGAGCTCTTTGAGAGGATATGCAGTGCTGGCAGGTTCAGTGAAGATGAGGCCAGATATTTCTTTCAGCAGCTTATCTCCGGTGTCCATTTCTGTCATACCATGCAAATATGCCACAGAGATTTGAAGCTTGAAAATACCCTTCTAGATGGAAGTCCTGCACCTCGGTTAAAAATTTGTGACTTTGGTTATTCCAAGTCATCTTTGCTGCATTCGCGACCAAAATCAACTGTTGGAACACCGGCTTATATAGCTCCGGAAGTTCTTTCTAGGCGAGAGTACGACGGAAAGTTGGCTGATGTATGGTCATGTGGGGTGACACTTTATGTCATGCTGGTTGGAGCATATCCGTTTGAGGACCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGTATAATGGCCGTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGATTGTAGACATCTCATCTCCCGTATATTTGTTGCAAATCCATTGAGGAGAATTACTATTAAGGAAATTAAGAATCATCCATGGTTTTTAAAGAATCTTCCAAGGGAGCTAACTGAATCCGCTCAAGCTATTTATTACCAGAGAGACAGCCCAAACTTTCAACTTCAAAGTGTGGACGAGATAATGAAAATTGTGGGAGAGGCAAGAAATCCACCTCCAGTATCTAGGCCTGTCAAAGGTTTTGGCTGGGAAGGTGAAGAAGATTTggatgaagaggtggaggaagaggaggatgaagaagatgagTATGATAAGAGGGTCAAAGAGGTTCATGCAAGTGGCGAATTCCAAATTAGTTAA 1053 0.4179 MDKYEAVKDLGAGNFGVARLMRNKLTKELVAMKYIERGHKIDENVAREIMNHRSLRHPNIIRYKEVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVHFCHTMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCRHLISRIFVANPLRRITIKEIKNHPWFLKNLPRELTESAQAIYYQRDSPNFQLQSVDEIMKIVGEARNPPPVSRPVKGFGWEGEEDLDEEVEEEEDEEDEYDKRVKEVHASGEFQIS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00242 350 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00242 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Cca03g00242 350 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Cca03g00242 350 MobiDBLite consensus disorder prediction 316 334 - -
Cca03g00242 350 Coils Coil 317 344 - -
Cca03g00242 350 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00242 350 PANTHER SERINE/THREONINE KINASE 2 343 - -
Cca03g00242 350 SUPERFAMILY Protein kinase-like (PK-like) 2 296 IPR011009 -
Cca03g00242 350 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Cca03g00242 350 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00242 350 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2H 2 343 - -
Cca03g00242 350 MobiDBLite consensus disorder prediction 304 350 - -
Cca03g00242 350 CDD STKc_SnRK2 3 259 - -
Cca03g00242 350 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00242 Cca-Chr3 3548361 3551516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00242 3 306 CBL-interacting serine-threonine protein kinases AT2G26980 38.438 1.34e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Cca03g00242 Pkinase 2.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00242 K14498 - gmx:547811 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00242 03 3548361 3551516 Cca03g00242 03 3548361 3551516 ECH
Cca09g02324 09 48560560 48564524 Cca03g00242 03 3548361 3551516 PCT