Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00238 ATGCCGCTTCTGAGGAGAAAGCCTTTTTCCGTAGCTGAGCCACCTGATGATTTGGAGCCACATGAGTCTGTTTATCAAATTCGATTTACAAAGGAAATATTTCGAGATTATAATGATTATTTGAACTGTTTGAATCAATACCGTAAGAGGGTTTGGATGTGCAAAGTAACTGGAAAAACATGCTTGACTTATGAAGAGGCTCTGGTGTCAGAGAAATGTGCTACTGAGAAAGTTCAACAGATTCCACAAGAATTAATGGCACCTGCTCTAAGGATTATTCAGTACAGCATGCTCCCTTTGAAGGATCTGGCTGATTCTATTGCTGAAAAGTTGCAGGAGCAGTTGTTTGTGGGTGCTCAATTGTATGGAAAAAAGAATGACAACGTATGTCCATGCAAAATATTGAAAGTGATGCAGGAAGATGTTGAGAATGTCCACTATGTGGTAGATTGGCTTGATAAAAACAATAATATTATTGAAAGAGCAGAAGTCAGCTCTCGAGATTTGATACAAAAGAAGCCACCTTTTAGCAGAAATATTTTGAAGTCTTTTATTCGCGAATCTACCTATCGAAATGCTCCTTGGGTTTTATGTGATAAGCTGGCAAAGAAACATGGAATCTCAACTGACATTCCAGAGGAGTTAAGAGGAAAGGTTTTCTTCAATAATGAGCTTGTGGTCTGCACCAAAAAAAGAAAAGCTGAGAGCTATTATGTTCAGGAAGAGTCAATCAAATATCCAATTGATGATCTATTAGTGAGGCCTAGTCCAGATGATCCTGTTTTCAGTAGTCGTCCTTCTCCATCAAGAGACTTCAATGTTCCAACTTATTGTGTAGGGGATCTCTTAATGGTTTGGGACTTTTTTATGTCTTTTGGTAAATTGTTACGTTTGTGGCCATACACTCTAAAAGATTTTGAAAATGCAATCAGCCACAAGGATAGCAATGTAGTTCTCCTAGTGGAATCTCATGCAGTACTCTTTCGTGTTCTCATCAAAGGTGATGATGAATACTCTGCAGCTGTACAGGAAAAAGTACAGAAGAAGATTACAATGATTAATTGGAAAGACTACTTATGCGATTTTCTAGAAATGATCAATATTCCCAAGCTGCGGCAGTATGAAGCAACCATTAAACGAGGACATTATGGTTATGTTGATGTCAATGGTAAACTAGAAATCTTTCGTGAATTAGTCAATCGAGCCCTTGAAACTGCTATTGTAAGGGAAAAACTCGATGAGTTTATTGAACAAAGGCAGGTACTGGGGGCTAATAAAAGGGAAGAAGCAATTAAAGTTGCAGGGAAGAGAAGAAAAGAAATGGAGCGGTTGAAAGTTGATTCTCAAAGCAACTGCGGTGAGAATGGGCGTCATGTTGACCATGATGCAAGTGTGTCACCAAATAATAATCACAAAATACAGAATGGTGACATTGGAAATAATAGAAATGGAGAGATAAAATCATCTATGCAAAAAGATGCATTGGAAAGTGGGATCAAGAATTCCAACCTTGCTTCAAAAAGAACAGCTAAAATGTTTGATTCAGAGCTGAATGGATCCACAGAAATTGGAAAAATAACCAGAAAGGAATCAAAGAAACAACCAAAGGGTGATAAGGATCAATCAGACAAAAGTAAAGAACATAGGAGAGAATATTTTGATCGGGAGATGGAGAAATGGTGTATTCGTGCAAGTCCCTTAGGCAAGGACAGACATTATAATAGGTATTGGTGGTTTCACCTTGATGGGAGGATATTTGTTGAAAGTCTTGACTCCAAGGAGTGGGGATACTACAGTAGCAAGGAAGAGCTTGATGCATTGATGAGTTCACTAAATTGCAAAGGCGAGAGGGAAAGGGCATTGCAAAACCAACTGGAAAAATATTATAGTAGAATATGCTCAGGACTGCAGAAAAGTTCAAAAGTTTTGATGCATAGGATTACCTTAGATGACTCTGTGGCCCGAAGGTCTAGTCGTGTTCGGGCTCCACCTAGGGAACATCCTGCCAAAGCTTTCCTCAGATATGTCAATAAGTGGAAAGAAGGAGTAAGTGATTTAAGGTGGTCTGACTTTTAG 2076 0.3868 MPLLRRKPFSVAEPPDDLEPHESVYQIRFTKEIFRDYNDYLNCLNQYRKRVWMCKVTGKTCLTYEEALVSEKCATEKVQQIPQELMAPALRIIQYSMLPLKDLADSIAEKLQEQLFVGAQLYGKKNDNVCPCKILKVMQEDVENVHYVVDWLDKNNNIIERAEVSSRDLIQKKPPFSRNILKSFIRESTYRNAPWVLCDKLAKKHGISTDIPEELRGKVFFNNELVVCTKKRKAESYYVQEESIKYPIDDLLVRPSPDDPVFSSRPSPSRDFNVPTYCVGDLLMVWDFFMSFGKLLRLWPYTLKDFENAISHKDSNVVLLVESHAVLFRVLIKGDDEYSAAVQEKVQKKITMINWKDYLCDFLEMINIPKLRQYEATIKRGHYGYVDVNGKLEIFRELVNRALETAIVREKLDEFIEQRQVLGANKREEAIKVAGKRRKEMERLKVDSQSNCGENGRHVDHDASVSPNNNHKIQNGDIGNNRNGEIKSSMQKDALESGIKNSNLASKRTAKMFDSELNGSTEIGKITRKESKKQPKGDKDQSDKSKEHRREYFDREMEKWCIRASPLGKDRHYNRYWWFHLDGRIFVESLDSKEWGYYSSKEELDALMSSLNCKGERERALQNQLEKYYSRICSGLQKSSKVLMHRITLDDSVARRSSRVRAPPREHPAKAFLRYVNKWKEGVSDLRWSDF 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00238 691 Pfam DDT domain 278 333 IPR018501 -
Cca03g00238 691 ProSiteProfiles WAC domain profile. 22 128 IPR013136 -
Cca03g00238 691 MobiDBLite consensus disorder prediction 442 485 - -
Cca03g00238 691 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Cca03g00238 691 MobiDBLite consensus disorder prediction 466 485 - -
Cca03g00238 691 SMART testlast3 276 337 IPR018501 -
Cca03g00238 691 MobiDBLite consensus disorder prediction 523 550 - -
Cca03g00238 691 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 680 - -
Cca03g00238 691 ProSiteProfiles DDT domain profile. 276 337 IPR018501 -
Cca03g00238 691 MobiDBLite consensus disorder prediction 510 550 - -
Cca03g00238 691 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 562 628 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00238 Cca-Chr3 3510103 3516213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00238 542 627 Homeobox Transcription Factor Family AT1G28420 34.737 1.17e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Cca03g00238 WAC_Acf1_DNA_bd 6.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00238 - - gmx:100784607 1085.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00238 03 3510103 3516213 Cca03g00238 03 3510103 3516213 ECH
Cca09g02320 09 48512272 48522176 Cca03g00238 03 3510103 3516213 PCT