Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00236 ATGCAAGACACGCTGCGCACTCTCTCCGACGACAAGGACGCTccgccgccgccctgccgccgccccccgcgccgcGTGTCTCCGGGCGCGGTGGAGCGCTCCCTCCCCAACGGCGACCTCTACTGCGGCACCCTCTGCGCCAACGCCCCGCACGGCGCCGGCAAGTACCTCTGGTCCGACGGCTGCATGTACGAGGGGGAGTGGCGCCGCGGCAAGGCCTCCGGCAAGGGCCGCTTCTCCTGGCCCTCCGGCGCCACCTACGAGGGCGACTTCGCCGCCGGCAAGATGCACGGCCACGGCACCTTCGTCGGCGCCAACGGCGACACCTACCACGGCGCCTGGCTCTCCGACCGGAAGGAGGGCTTCGGCCAGAAGCGCTACGCGAACGGCGACGTTTACGAAGGTTGGTGGAAGTGCAATTTGCAAGAGGGGGAAGGAAGGTACACGTGGAGGAACGGTAATGAGTATTTTGGTGAGTGGAGGAATGGTTGTATATCTGGTAAGGGCGTGCTGGTGTGGAGGAACGGGAACCGTTACCAAGGGTTTTGGGAGAACGGGGTTCCCAAGGGCAAGGGAACGTTCACGTGGCGCGATGGGAGCGTTTCCAATGGGAATTGGGGGAAGGAGTTTGTCATCGAGAAAAGAGTGTCGGTGGATGATGCTTCTAACAAGAGTGTCACTGTGAGTTTTCCCAGGATTTGTATTTGGGAGCTTGATGGTGAGGCTGGGGATATTACTTGCGACATTGTTGAAGCTTCTGTGTTTTGCGGTGGCGGAGGGTGTGAGAGTGAGACTGATGATGTGCGCTTCAACAAGAGTCCTTGTGGCTCTGTTGATGGGGATGCTAAGAAGAAGCCTGGTCATGCTGTTTCCAAGGGGCATAAGAATTATGATTTGATGCTTAATCTTCAACTGGGTATTAGGTACACTGTTGGGAAGCATGCTTCGGTTTTGACAGAGCTTAGGCCTGGGGATTTCGATCCCAAGGAGAAATTCTGGACGAGATTCCCACCGGAGGGTTCTAAGTTTACACCGCCACATCAGTCAGTGGACTTCAGGTGGAAAGATTACTGTCCCATGGTGTTCAGACATCTAAGGGAATTGTTTGGGATAGATCCTGCGGATTACATGCTTGCTATTTGCGGCGATGACACACTGAGGGAGATGTCTTCTCCGGGTAAAAGTGGAAGCTTCTTTTACCTCACTCAAGATGACCGGTTCATTATCAAGACCTTGAAGAAGTCTGAGGTCAAGGTGCTCATCAGGATGCTTCCAAGTTACTATCAACATGTTTGTCAGTACAAGAATTCCCTGGTGACGAAATTTCTGGGAGTTCATTGTGTCAAACCTATTGGAGGTCAGAAGACTCGATTTATTGTGATGGGCAATGTGTTTTGTTCGGAGTATCGGATCCATAAGCGGTTTGACCTCAAAGGTTCTTCTCATGGTCGCACAACTGATAAACCCCGGGAGCAGATTGACGAGACTACCACTCTTAAAGACCTTGATCTTTGTTTTGTCTTCCGCCTGGAACAGTCTTGGTTTCAGGAGCTTAAATGGCAACTTGATAGAGACTGTGAATTCCTGGAAGCAGAGGGAATAATGGATTACAGTTTTTTGATTGGCCTTCATTTTCGTGATGATAGCTCAGTTGATGACGGAAAGAGTTCACCAAACGAGTTGTGTTCAGGCAAGAGAGACTTGCAAAATGATGACATACAGGATATGAAGTGGATACCACCCATTGGTCGGGGACCTCTAATTCGACTGGGAGCAAACATGCCTGGCAGAGCTGAGAGAATGTGTAAAGCTGGATTGGATCAGCACACTGGTACTGGAAGTAGCAATTCTACCCCTTCAGAGAGTGGTGGGGAGGTCTCTGATGTAATCCTCTACTTTGGTATAATTGACATTCTCCAAGATTACGATATTAGTAAAAAGCTAGAGCATGCATACAAGTCACTGCAAGTGGATCCCTCCTCCATCTCAGCCGTTGATCCCAAGCTATATTCCAAAAGGTTTAGGGATTTCATACACAGAATCTTTGTGGAGGACAAATGA 2061 0.4983 MQDTLRTLSDDKDAPPPPCRRPPRRVSPGAVERSLPNGDLYCGTLCANAPHGAGKYLWSDGCMYEGEWRRGKASGKGRFSWPSGATYEGDFAAGKMHGHGTFVGANGDTYHGAWLSDRKEGFGQKRYANGDVYEGWWKCNLQEGEGRYTWRNGNEYFGEWRNGCISGKGVLVWRNGNRYQGFWENGVPKGKGTFTWRDGSVSNGNWGKEFVIEKRVSVDDASNKSVTVSFPRICIWELDGEAGDITCDIVEASVFCGGGGCESETDDVRFNKSPCGSVDGDAKKKPGHAVSKGHKNYDLMLNLQLGIRYTVGKHASVLTELRPGDFDPKEKFWTRFPPEGSKFTPPHQSVDFRWKDYCPMVFRHLRELFGIDPADYMLAICGDDTLREMSSPGKSGSFFYLTQDDRFIIKTLKKSEVKVLIRMLPSYYQHVCQYKNSLVTKFLGVHCVKPIGGQKTRFIVMGNVFCSEYRIHKRFDLKGSSHGRTTDKPREQIDETTTLKDLDLCFVFRLEQSWFQELKWQLDRDCEFLEAEGIMDYSFLIGLHFRDDSSVDDGKSSPNELCSGKRDLQNDDIQDMKWIPPIGRGPLIRLGANMPGRAERMCKAGLDQHTGTGSSNSTPSESGGEVSDVILYFGIIDILQDYDISKKLEHAYKSLQVDPSSISAVDPKLYSKRFRDFIHRIFVEDK 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00236 686 Gene3D - 464 682 - -
Cca03g00236 686 SMART PIPK_2 322 683 IPR002498 GO:0016307|GO:0046488
Cca03g00236 686 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 381 681 IPR002498 GO:0016307|GO:0046488
Cca03g00236 686 SMART morn 177 198 IPR003409 -
Cca03g00236 686 SMART morn 108 129 IPR003409 -
Cca03g00236 686 SMART morn 39 60 IPR003409 -
Cca03g00236 686 SMART morn 154 175 IPR003409 -
Cca03g00236 686 SMART morn 131 152 IPR003409 -
Cca03g00236 686 SMART morn 62 83 IPR003409 -
Cca03g00236 686 SMART morn 85 106 IPR003409 -
Cca03g00236 686 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 16 686 IPR023610 -
Cca03g00236 686 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 282 463 IPR027484 -
Cca03g00236 686 Gene3D - 114 162 - -
Cca03g00236 686 Gene3D - 66 113 - -
Cca03g00236 686 Gene3D - 163 231 - -
Cca03g00236 686 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 36 154 - -
Cca03g00236 686 MobiDBLite consensus disorder prediction 1 19 - -
Cca03g00236 686 CDD PIPKc_AtPIP5K_like 296 681 - -
Cca03g00236 686 MobiDBLite consensus disorder prediction 1 32 - -
Cca03g00236 686 Pfam MORN repeat 156 178 IPR003409 -
Cca03g00236 686 Pfam MORN repeat 48 63 IPR003409 -
Cca03g00236 686 Pfam MORN repeat 87 109 IPR003409 -
Cca03g00236 686 Pfam MORN repeat 133 154 IPR003409 -
Cca03g00236 686 Pfam MORN repeat 110 132 IPR003409 -
Cca03g00236 686 Pfam MORN repeat 179 201 IPR003409 -
Cca03g00236 686 Pfam MORN repeat 64 85 IPR003409 -
Cca03g00236 686 SUPERFAMILY SAICAR synthase-like 292 682 - -
Cca03g00236 686 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 289 682 IPR002498 GO:0016307|GO:0046488
Cca03g00236 686 PANTHER PHOSPHATIDYLINOSITOL 4-PHOSPHATE 5-KINASE 16 686 - -
Cca03g00236 686 PIRSF PIP5K_plant 208 686 IPR017163 GO:0005524|GO:0016308
Cca03g00236 686 PIRSF PIP5K_plant 22 212 IPR017163 GO:0005524|GO:0016308
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00236 Cca-Chr3 3470127 3475133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00236 24 685 Acyl Lipid Metabolism Gene Families AT1G77740 66.429 0.0 914
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00236 K00889 - gmx:100808235 1249.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02319 09 48495787 48499689 Cca03g00236 03 3470127 3475133 PCT
Cca03g00236 03 3470127 3475133 Cca05g00937 05 25070702 25072630 PCT