Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00235 ATGGCCGCAGAAATTTGTGGCGCGTCTCTATTCTTATCCGTTAAAACTcaactgcaacaacgacaccaacaccaacaccaacGCGCGTTCTTCCACACTCAACGAAGCAGAACGAGAAGAAGCACCACCAGATTCTACTCATCCAAACGCTGCTTCTGTTCCGTCTTTCCAAATGCCTCCACGTTTCGCCGCGGCGTCGCGTGTCAGGTCGCGAGCGCCGACCTCGAATCCGCCGCCAGAGCCGGCGAGGATCGTCTCTCTAAGGTATATTCACTAAATTGCCCTCGTTCGAAGCTACAATACACGCTAATTCGGTTTGAATCGGTTCGGTTTTGGTTTCAGGTGCCGGTGCGTAATATAAGAAACTTCAGCATCATTGCGCATATCGACCACGGAAAATCCACGTTGGCGGATAAGTTGCTTCAGGTTACTGGCACGGTGCAGCAGCGAGAGATGAAGGATCAAGGAATCACTATTAAGCTTCAGGCAGCTCGAATGCGTTATGTGTTTGAAAACAAACCTTATTGCTTGAATCTAATAGATACTCCGGGGCATGTCGACTTCTCCTACGAGGTTTCTCGGTCACTTGCTGCATGTGAGGGTGCTCTTCTTGTAGTAGATGCTTCTCAGGGGGTTGAAGCACAAACACTAGCTAATGTGTATTTGGCTTTGGAGAACAACCTAGAAATTATACCTGTTTTGAACAAAATAGATCTCCCAGGTGCAGAACCAGATCGTGTTATCAAGGAGATTGAAGAGATTGTAGGTCTAGATTGTAGCAATGCGATTCTCTGCTCTGCAAAGGAAGGAATAGGTATAATTGATATCCTCAATGCAATCGTTTCAAGAATTCCTCCACCTGAAGATACATCTAAAAGACCACTGAGGGCTTTAATATTTGATAGCTACTATGATCCATATAGAGGTGTTATTGTGTACTTTCGAGTTGTAGATGGGACTATAAAGAAAGGTGACAGAGTTTATTTTATGGCAAGTGGGAAGGACTATTTTGCTGATGAAATTGGAGTTTTGTCTCCCAATCAACTACAAGTTGAAGAATTGTATGCTGGTGAGGTGGGTTATCTATCTGCATCAATAAGAACAGTAGCTGATGCTAGAGTGGGTGACACTATTACTCACTATGGAAGAAAGGCTGATAATTCCCTCTCTGGATACGAGGAAGCCACTCCTATGGTGTTTTGTGGCCTGTTTCCTGTTGATGCTGACCAATTTCCTGATCTGCGTGATGCACTTGAGAAGCTACAACTCAATGATGCTGCACTGAAGTTTGAACCTGAGACCTCAAGTGCTATGGGATTTGGCTTTAGGTGTGGATTTCTGGGTCTTCTTCATATGGAAATTGTTCAGGAGAGACTTGAGAGAGAATACAATTTGAGCTTGATAACAACTGCTCCAAGTGTTGTGTACAGAGTAAACTGTGTAAATGGTGATACTGTCGAATGCTCGAATCCATCTTTACTTCCGGAGCCTGGAAAAAGGAAATCAATTGAGGAGCCATTTGTCAAGATTGAGATGCTTACACCAAAGGACTACATTGGTCCGCTTATGGAACTAGCACAAGAAAGAAGAGGGCAATTCAAAGAAATGAAATTTATCGCTGAAAATAGGGCATCAATCACCTATGAATTACCACTAGCAGAGATGGTTGGCGATTTCTTTGATCAGTTAAAGTCAAGAAGTAAGGGTTATGCTAGTATGGAGTATACCTTTGTCGGGTACGTAGAAAGCAATTTAATTAAACTTGATATACGTATAAATGGTGATTGTGTGGAGCCATTGGCTACAATTGTGCACAATGATAAGGCATATTCTGTGGGAAGGGCTTTGACTCTAAAGTTGAAGGAGCTCATACCGCGACAAATGTTTAAAGTACCAATTCAAGCGTGCATAGCATCAAAAGTGATTGCTAGTGAAGCGATATCTGCAATAAGGAAGGACGTACTAGCCAAATGCTACGGTGGGGACATTTCAAGAAAAAAGAAATTGCTTAAGAAACAGGCTGAAGGAAAGAAAAGGATGAAGTCTATTGGTAAAGTTGATGTGCCCCAAGAAGCTTTCATGGCAGTTTTGAAACTTGAAAAGGAGGAGTTTACCAACCTCTAA 2124 0.4214 MAAEICGASLFLSVKTQLQQRHQHQHQRAFFHTQRSRTRRSTTRFYSSKRCFCSVFPNASTFRRGVACQVASADLESAARAGEDRLSKVYSLNCPRSKLQYTLIRFESVRFWFQVPVRNIRNFSIIAHIDHGKSTLADKLLQVTGTVQQREMKDQGITIKLQAARMRYVFENKPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPDRVIKEIEEIVGLDCSNAILCSAKEGIGIIDILNAIVSRIPPPEDTSKRPLRALIFDSYYDPYRGVIVYFRVVDGTIKKGDRVYFMASGKDYFADEIGVLSPNQLQVEELYAGEVGYLSASIRTVADARVGDTITHYGRKADNSLSGYEEATPMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGDTVECSNPSLLPEPGKRKSIEEPFVKIEMLTPKDYIGPLMELAQERRGQFKEMKFIAENRASITYELPLAEMVGDFFDQLKSRSKGYASMEYTFVGYVESNLIKLDIRINGDCVEPLATIVHNDKAYSVGRALTLKLKELIPRQMFKVPIQACIASKVIASEAISAIRKDVLAKCYGGDISRKKKLLKKQAEGKKRMKSIGKVDVPQEAFMAVLKLEKEEFTNL 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00235 707 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 118 288 IPR000795 GO:0003924|GO:0005525
Cca03g00235 707 Gene3D - 584 658 IPR038363 -
Cca03g00235 707 Pfam Elongation factor Tu GTP binding domain 119 285 IPR000795 GO:0003924|GO:0005525
Cca03g00235 707 Gene3D - 472 582 - -
Cca03g00235 707 PANTHER TRANSLATION FACTOR GUF1-RELATED 114 698 IPR006297 GO:0005525
Cca03g00235 707 TIGRFAM small_GTP: small GTP-binding protein domain 121 279 IPR005225 GO:0005525
Cca03g00235 707 SUPERFAMILY EF-G C-terminal domain-like 396 474 IPR035647 -
Cca03g00235 707 SUPERFAMILY Translation proteins 286 385 IPR009000 -
Cca03g00235 707 Pfam GTP-binding protein LepA C-terminus 592 698 IPR013842 -
Cca03g00235 707 SUPERFAMILY EF-G C-terminal domain-like 503 597 IPR035647 -
Cca03g00235 707 TIGRFAM lepA: elongation factor 4 119 699 IPR006297 GO:0005525
Cca03g00235 707 CDD lepA_C 505 584 IPR035654 -
Cca03g00235 707 Pfam Elongation factor G C-terminus 503 588 IPR000640 -
Cca03g00235 707 CDD LepA 121 287 - -
Cca03g00235 707 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 114 698 - -
Cca03g00235 707 PRINTS GTP-binding elongation factor signature 122 135 IPR000795 GO:0003924|GO:0005525
Cca03g00235 707 PRINTS GTP-binding elongation factor signature 178 188 IPR000795 GO:0003924|GO:0005525
Cca03g00235 707 PRINTS GTP-binding elongation factor signature 230 239 IPR000795 GO:0003924|GO:0005525
Cca03g00235 707 PRINTS GTP-binding elongation factor signature 194 205 IPR000795 GO:0003924|GO:0005525
Cca03g00235 707 Gene3D Elongation Factor G (Translational Gtpase), domain 3 390 471 - -
Cca03g00235 707 CDD EF4_II 295 380 - -
Cca03g00235 707 Gene3D - 117 289 IPR027417 -
Cca03g00235 707 CDD EF4_III 397 472 - -
Cca03g00235 707 Pfam Elongation factor Tu domain 2 309 379 IPR004161 GO:0005525
Cca03g00235 707 Gene3D Translation factors 290 389 - -
Cca03g00235 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 309 IPR027417 -
Cca03g00235 707 SMART EFG_C_a 502 590 IPR000640 -
Cca03g00235 707 Hamap Elongation factor 4 [lepA]. 115 702 IPR006297 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00235 Cca-Chr3 3453228 3465659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00235 118 342 Eukaryotic Initiation Factors Gene Family AT3G22980 31.325 3.31e-21 97.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00235 03 3453228 3465659 Cca03g00235 03 3453228 3465659 ECH