Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00215 ATGATTGGAATGAAGGGTGAAATAGAATTGCCTCCTGGCTTCAGATTTCACCCCACTGATGAAGAATTGGTGAATCACTACTTGTGTAGGAAATGCGCTGGCCAACCAATCGCGGTTCCTGTAATCAAAGAGGTTGATTTGTATAAATTCGACCCATGGCAGCTTCCAGAAATGGGATTTTACGGCGAGAAAGAATGGTACTTTTTCTCTCCTCGGGATAGGAAGTACCCTAACGGTTCACGGCCGAACCGGGCCGCCGGGAGCGGTTATTGGAAAGCCACCGGAGCTGATAAACCGATCGGAAAACCGAAAGCGCTTGGAATCAAGAAAGCTCTTGTTTTTTACGCGGGAAAAGCCCCCAAGGGAGTCAAAACCAATTGGATCATGCACGAGTATCGTCTCGCCAATGTTGACCGTTCTGCCTCCAAGAAAAATAACAACTTGAGGCTTGATGACTGGGTGTTGTGTCGAATTTACAACAAGAAGGGGAAGATTGAAAAATACAACACGGGGGCACCGAAAATGAATCATGGGGTGGTTCATAATTTTgagcatgagaaagagaacgagaacgagacgaAGCCGGAGATTCATAAGCTTGGGATGGAGCAATTGTACATGGACACGTCGGATTCGGTGCCTAGGTTGCACACGGACTCGAGCTGTTCGGAGCACGTGGTTTCGCCTGATGTCACGTGCGAGAGGGAGGTGCAGAGTGAGCCCAAGTGGAACGATCTCGACCTACAGATAGAGAACCCGTTTGATTTTCAGTTCAATTACTTTGATAATAACATCTCCGTGGATGACCCTTTTGGCAATCAGGTTCAGTATCAAATGGGCCAGCTTTCCCCTTTGCAGGACATGTTCATGTATCTACAGAAGCCTTATTGA 891 0.4568 MIGMKGEIELPPGFRFHPTDEELVNHYLCRKCAGQPIAVPVIKEVDLYKFDPWQLPEMGFYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNNLRLDDWVLCRIYNKKGKIEKYNTGAPKMNHGVVHNFEHEKENENETKPEIHKLGMEQLYMDTSDSVPRLHTDSSCSEHVVSPDVTCEREVQSEPKWNDLDLQIENPFDFQFNYFDNNISVDDPFGNQVQYQMGQLSPLQDMFMYLQKPY 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00215 296 Pfam No apical meristem (NAM) protein 11 134 IPR003441 GO:0003677|GO:0006355
Cca03g00215 296 PANTHER NAC TRANSCRIPTION FACTOR 56 8 270 - -
Cca03g00215 296 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
Cca03g00215 296 Gene3D NAC domain 19 166 IPR036093 GO:0003677|GO:0006355
Cca03g00215 296 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 8 270 - -
Cca03g00215 296 ProSiteProfiles NAC domain profile. 10 161 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00215 Cca-Chr3 3205005 3206736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00215 4 296 NAC Transcription Factor Family AT1G01720 64.918 4.72e-132 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca03g00215 NAM 5.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00215 - - gmx:100814504 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00215 03 3205005 3206736 Cca03g00215 03 3205005 3206736 ECH