Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00198 ATGTCTGGAAAGGCCAAAAGAAGAgacgatgacgctgcctccgacgccgactccgagggccacgcgccgccCAGGAAGGCCATCAAGAAAGATTCCGACGACGACTCCGACTCCATCTTCGTATGCGAGATTTCGAAGAACAGGAGGGTTTCGGTGAGGAACTGGCAAGGCAGGGTCGTGGTTGACATTCGCGAGTTTTACCTCAAAGATGGCAAGCAAATGCCTGGCAAGAAAGGTATCTCGTTGACCATGGATCAGTGGAATGTGCTTCGTGGTCACGTTGAAGAAATTGACAAGGCAGTTAGTGAAAGTTCTTAG 318 0.4088 MSGKAKRRDDDAASDADSEGHAPPRKAIKKDSDDDSDSIFVCEISKNRRVSVRNWQGRVVVDIREFYLKDGKQMPGKKGISLTMDQWNVLRGHVEEIDKAVSESS 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00198 105 Pfam Transcriptional Coactivator p15 (PC4) 42 91 IPR003173 GO:0003677|GO:0006355
Cca03g00198 105 MobiDBLite consensus disorder prediction 1 36 - -
Cca03g00198 105 PANTHER BNAC09G47220D PROTEIN 1 103 - -
Cca03g00198 105 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 1 103 IPR045125 GO:0003713|GO:0060261
Cca03g00198 105 Gene3D Transcriptional Coactivator Pc4; Chain A 29 105 IPR009044 GO:0003677|GO:0006355
Cca03g00198 105 SUPERFAMILY ssDNA-binding transcriptional regulator domain 41 102 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00198 Cca-Chr3 2965863 2968573 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Cca03g00198 PC4 7.5e-25 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00198 K25815 - gmx:100820368 166.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00198 03 2965863 2968573 Cca03g00198 03 2965863 2968573 ECH