Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00193 ATGAAGCTTATCGGCGACGGTGCCGGTGGCCGGATTGTCCTCGTCGGCGTCAAATTAGATCCTCGCAGCCGTGAATTGCTCACGTGGGCGCTCGTTAAGGTGGCGGAGCCCGGCGACCTCGTCATTGCGCTTCACGTGCTCGACACCGCCACCGAGGGAGCGGCGTCGCTGTTATCTCTGGTGAAGACTTTCGATTCCGTTCTCGCCGTTTACGAAGGCTTCTGCAACCTGAAGCAGGTTGGATTGAGGCTTAAAGTGTGTCGCGGTGGTTCGGTTCGGAAGGTTCTGGTGAACGAGGCGAAGGCGTTTGGCGTTTCCACGGTGATTTTGGGAACTTCTAAATCTCACCACACTATTCGTTCTTCCGCTTGGGTTGCCAAATACTGCGCGAAGAAATTGCCCAAGTGTGTCTCTGTGTTCTCTGTTGATAATGGCAAAATCGCGTTCCGCAGAGAAGCTTCCAGATTGTGTAGTGATCGAGAAAAATTACTCGAAGGGGCAAATTTGTCGGCAAAATCATTGGTGGTTTATACAAGTAAGAGTACGAAGAGTTGTGGAAGTTGTGCGTTGCAGGAGTGTTCTGGAATTGAGTTTGAGCAAGGGTTGTGTGAGGATGTTGAGAAGGAGAATCCACTTGCTTTGGTTCCGTTTAAGAATCTTGATGAGGATGATGCTCCTTGTTATTCAGTTGTGGCCAGTAATTCGAAGCGTAGACCTGGTTGGTCGTTGCTTCGTCATGTATTTCATCCCAGAAAGCATACCCATACCCATAAGCATTGTATGAAAAATACATTTGTTTTTCAACGGGCATTGCGACAACCGACTTTTCATTCTTCGGCTGTAGTCCATCCAGATCAGAAACAAATTACTATTGAGCAGATTGATGATTCCCCACTTGATGGGGTGAGTGGTGCCATTGTGCCATTTGGATCTGCTTCTGTTTTTGCTTCTCCCTCCCTTTGTAGTGATTTGAGTAGCCTTCCTGAAGAATTGTTGGTGTTGCAAGAGAAGTATTCGTCTTCATGCAGATTATATAGTTTGCAGGAACTTGTATCAGCAACCTCCAACTTCGCACTGGAAAATTTGGCTGGCAAAGGTGGTTGTAGTTATGTTTACAGAGGATGTCTTCCAGATGGCAAGGAATTGGCTGTGAAAATTCTGAAGCCATCTGAAAACGTGATAAAGGAATTTGTTCAGGAAATTGAGATCGTTACAACTTTGCAGCACAAGAACGTAATATCTATATCTGGCTTTTGTTTAGAGGGCAACCATTTGCTACTAGTTTATGATTTTTTATCAAGGGGAAGCCTAGAAGAAAACCTTCATGTCAACAAGGCGGACTGTAGTGCATTTGGTTGGCAAGAAAGGTACAAGGTGGCCGTAGGTGTAGCAGAGGCACTGGATTATCTGCATAATGGCTGTGCAAGAGCCGTGATCCATAGGGATGTGAAATCTTCGAATATCCTTCTTTCTGATGATTTTGAGCCTCAGCTTTCAGATTTTGGACTGGCTAGTTGGGCTTCATCTTCTTCTTCCCATATTACTTGCACTGATGTCGCTGGAACTTTTGGGTGA 1575 0.4597 MKLIGDGAGGRIVLVGVKLDPRSRELLTWALVKVAEPGDLVIALHVLDTATEGAASLLSLVKTFDSVLAVYEGFCNLKQVGLRLKVCRGGSVRKVLVNEAKAFGVSTVILGTSKSHHTIRSSAWVAKYCAKKLPKCVSVFSVDNGKIAFRREASRLCSDREKLLEGANLSAKSLVVYTSKSTKSCGSCALQECSGIEFEQGLCEDVEKENPLALVPFKNLDEDDAPCYSVVASNSKRRPGWSLLRHVFHPRKHTHTHKHCMKNTFVFQRALRQPTFHSSAVVHPDQKQITIEQIDDSPLDGVSGAIVPFGSASVFASPSLCSDLSSLPEELLVLQEKYSSSCRLYSLQELVSATSNFALENLAGKGGCSYVYRGCLPDGKELAVKILKPSENVIKEFVQEIEIVTTLQHKNVISISGFCLEGNHLLLVYDFLSRGSLEENLHVNKADCSAFGWQERYKVAVGVAEALDYLHNGCARAVIHRDVKSSNILLSDDFEPQLSDFGLASWASSSSSHITCTDVAGTFG 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00193 524 CDD USP_Like 13 137 - -
Cca03g00193 524 SUPERFAMILY Protein kinase-like (PK-like) 337 523 IPR011009 -
Cca03g00193 524 Gene3D Transferase(Phosphotransferase) domain 1 432 524 - -
Cca03g00193 524 Pfam Universal stress protein family 11 137 IPR006016 -
Cca03g00193 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Cca03g00193 524 Gene3D Phosphorylase Kinase; domain 1 326 431 - -
Cca03g00193 524 PANTHER OS01G0253100 PROTEIN 7 524 IPR045271 GO:0004714|GO:0006468
Cca03g00193 524 SMART serkin_6 357 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00193 524 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 116 - -
Cca03g00193 524 Pfam Protein kinase domain 361 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00193 524 Gene3D HUPs 5 140 IPR014729 -
Cca03g00193 524 ProSiteProfiles Protein kinase domain profile. 357 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00193 524 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 7 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00193 Cca-Chr3 2881600 2885563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00193 344 524 Trihelix Transcription Factor Family AT1G68690 47.253 6.04e-44 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Cca03g00193 Pkinase 2.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00193 - - gmx:100815722 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00912 05 24528969 24533080 Cca03g00193 03 2881600 2885563 PCT