Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca03g00190 | ATGAAGAAAAACGGCTCCCGGAAGcgcgcgccgccgccgtcgcaacccccgccggcgAAGCATCCCTCGATGACTCAGGAAGAAGAGTTCATGGACGAAGACGTGTTCCTGGACGAAACCCTCCTTTCCGCCGACGAAGAGTCCCTCATTCTCCGCGACATCGAGCAGCGCCAGGCCCTCGCCACGCGCCTCTCCAAGTGGACGCGTCCTCCTCTCGACGCCGACTACGTCGTCCAATCTCGCAGCGTCGTTTTCCAGCAGCTGGAGATTGATTACGTGATCGGAGAGAGTCACAAGGAGTTGCTGCCGAACTCGTCTGGACCTGCTGCCGTTATCAGAATATTTGGAGTTACTAAGGAAGGACACAGTGTTTGCTGCAATGTTCATGGGTTTGAGCCATATTTCTATGTCTGTTGCCCACCTGGAATGGGTCCAGATGATATCTCCCGTTTTCATCAAACTCTTGAGGGAAGGATGAGAGAAGCCAATAGAAACAGTAATGTGGGAAAATTTGTTCGCCGCATTGAAATGGTGCAGAGAAGGAGTATTATGTACTATCAACAATCCAATTCCCAACCCTTTCTCAAAATTGTAGTTGCACTTCCAACAATGGTTGCCAGCTGTCGTGGCATACTTGACAGGGGTATTCAGCTTGATGGTCTGGGAATGAAGAGCTTCTTGACTTATGAAAGCAATGTACTTTTTGCCCTTCGCTTCATGATTGATTGTAACATAGTTGGTGGAAATTGGATTGAAGTTCCAGCTGGAAAATATAATAAGACAGCAAGAAGCTTGTCTTACTGCCAGTTAGAGTTTGATTGCTTGTATTCCGAATTGATTAGTCATCCTCCAGAAGGGGAATATTCAAAGATGGCTCCATTCCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCTACTCACGATCCTGTTATCCAGATTGCTAATTTGGTTACTTTACAAGGAGAGGACCAGCCATTAATTCGTAATGTGATGACCCTTAAATCATGTTCTCCTATCGTTGGTGTTGATGTGATGTCATTTGATACAGAAAGAGAAGTCCTGCTAGCTTGGAGGGATTTTATTCGTGAAGTGGATCCAGATATTATTATTGGATATAACATCTGCAAATTTGACTTACCATATCTTATTGAGAGAGCTGCGAATCTGAAGATAGCAGAATTTCCAATTCTGGGCCGTATCAGGAACAGTAGAGTTCGAGTAAAGGATACAACTTTCTCGTCAAGGCAGTATGGGACCAGGGAAAGTAAAGAAGTTACTGTAGAAGGGAGAGTTCAGTTTGATTTACTCCAGGTTATGCAAAGAGACTACAAATTAAGTTCTTATTCATTGAATTCTGTGTCAGCCCACTTCCTTTCTGAGCAGAAAGAGGACGTTCATCATTCAATTATATCTGATCTTCAGAATGGAAATGCAGAAACTCGGAGGCGCCTTGCTGTGTATTGTTTGAAGGATGCATATCTCCCTCAGCGGCTTTTGGATAAATTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACAGGTGTCCCAATTTCTTTTCTACTTTCCAGGGGCCAAAGCATTAAGGTTCTTTCTCAACTTCTTAGGAAGGCAAGACAGAAGAATCTTGTCCTTCCTAATGTCAAACAGGCTGGGTCTGAACAAGGAACATTTGAAGGTGCCACTGTATTGGAGGCAAGGGCGGGATTTTATGAAAAACCTATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACTCTGGTGACTCCAGAAGATGCTCGCAAGCTTAACATCCCTCCAGAGTCTGTGAACAGAACTCCATCTGGGGAAACATTTGTTAAATCAAATTTGCAGAAGGGAATACTTCCTGAAATTCTTGAAGAGCTATTAACAGCCCGGAAAAGGGCAAAAGCAGACTTGAAGGAGGCAAAAGATCCCCTTGAGAAGGCAGTGCTAGATGGTAGACAGCTGGCCCTGAAAATTAGTGCAAATTCCGTGTATGGGTTTACAGGGGCTACCATTGGTCAGTTACCATGTCTAGAGATATCATCAAGTGTAACAAGCTATGGTCGACAAATGATTGAGCACACAAAAAAACTCGTGGAAGATAAATTTACAACACTTAATGGCTATGAACACAACGCTGAGGTAATATATGGAGACACAGATTCAGTCATGGTACAATTTGGTGTGTCTGCCGTAGAAGAGGCAATGAACTTGGGGAGAGAAGCTGCTGAATATATTAGTGGAACTTTCACAAAACCCATCAAACTAGAATTTGAGAAGGTTTACTATCCATATCTCTTGATCAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGGTATTGAAACAGTTCGAAGAGACAATTGTTTATTGGTCAAAAACCTGGTGAACGATTGCCTTCACAAAATACTGATCGACAGAGACATTCCTGGGGCAGTTCAGTATGTCAAGACTGCAATTTCAGATCTTCTCATGAATCGCATGGATTTATCACTTCTGGTCATTACAAAGGGTTTAACGAAGACAGGAGATGATTATGAAGTAAAGGCAGCTCATGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGAGATAGAGTACCTTATGTTATTGTTAAAGCTGCAAAAGGTGCAAAGGCATATGAGAGATCAGAGGATCCTATCTATGTGCTAGAGAACAACATACCAATAGATCCCCAATACTATCTTGAGAATCAAATTAGCAAGCCAATTCTGAGAATTTTTGAGCCAATTCTGAAGAATGCTAGCAAGGAACTTCTCCATGGAAGCCATACAAGATCTATTTCTATTTCTACCCCGTCAAACAGTGGCATATTGAAATTTGCTAAGAAACAGCTTACGTGCATTGGTTGTAAAGCTTTACTTAGCAATGGTCATCACACTCTCTGTTCACATTGCAAAGGAAGGGAAGCTGAGCTGTACTGTAAAACAGTAGCTCAAGTGTCTGATCTGGAGATGCTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACAAGTCGGGATTGTCCAATTTTCTACCGACGGAAAAAGGCACAGAAAGATATGGCCGAAGCAAGGTCGCAATTGGACCGATGGAACTTCTAA | 3258 | 0.4211 | MKKNGSRKRAPPPSQPPPAKHPSMTQEEEFMDEDVFLDETLLSADEESLILRDIEQRQALATRLSKWTRPPLDADYVVQSRSVVFQQLEIDYVIGESHKELLPNSSGPAAVIRIFGVTKEGHSVCCNVHGFEPYFYVCCPPGMGPDDISRFHQTLEGRMREANRNSNVGKFVRRIEMVQRRSIMYYQQSNSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFLTYESNVLFALRFMIDCNIVGGNWIEVPAGKYNKTARSLSYCQLEFDCLYSELISHPPEGEYSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEDQPLIRNVMTLKSCSPIVGVDVMSFDTEREVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAANLKIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKARQKNLVLPNVKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDARKLNIPPESVNRTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGVSAVEEAMNLGREAAEYISGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKTAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIVKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGILKFAKKQLTCIGCKALLSNGHHTLCSHCKGREAELYCKTVAQVSDLEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARSQLDRWNF | 1085 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca03g00190 | 1085 | TIGRFAM | pol2: DNA polymerase (pol2) | 346 | 956 | - | - | |
| Cca03g00190 | 1085 | Gene3D | - | 293 | 511 | IPR036397 | GO:0003676 | |
| Cca03g00190 | 1085 | PANTHER | DNA POLYMERASE CATALYTIC SUBUNIT | 81 | 1085 | - | - | |
| Cca03g00190 | 1085 | SUPERFAMILY | Ribonuclease H-like | 109 | 531 | IPR012337 | - | |
| Cca03g00190 | 1085 | SMART | polmehr3 | 292 | 751 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
| Cca03g00190 | 1085 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Cca03g00190 | 1085 | ProSitePatterns | DNA polymerase family B signature. | 739 | 747 | IPR017964 | GO:0000166|GO:0003676 | |
| Cca03g00190 | 1085 | Gene3D | Palm domain of DNA polymerase | 567 | 796 | IPR023211 | - | |
| Cca03g00190 | 1085 | SUPERFAMILY | DNA/RNA polymerases | 550 | 960 | IPR043502 | - | |
| Cca03g00190 | 1085 | Gene3D | Helix hairpin bin | 640 | 692 | - | - |
Showing 1 to 10 of 22 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca03g00190 | K02327 | - | gmx:100817379 | 2081.99 |
Showing 1 to 1 of 1 entries