Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00185 ATGGAAGATGAAAGCCACACCAATTTGCCAAATGGGCTCATCACAAAAAGCCACCAAAGCCCTTCCTTAAAGACATGCAACAATGTTAACAACAAAGAACCATATTGCTTTCTCCCTGTAGCCAACGTTGGAAGAATCATGAAAAAGGTCATCCCCAGCAACAGAAAAATATCAAAGGATGCAAAAGAAACGGTCCAAGAATGTGTGTTGGAATTCATTAGCTTTGTAACCAGTGAAGCCTCCAACAAGTGCCAAAAAGAAAAGAGAAAAAACATCAATGGTGAAGATATCATTTAG 297 0.3906 MEDESHTNLPNGLITKSHQSPSLKTCNNVNNKEPYCFLPVANVGRIMKKVIPSNRKISKDAKETVQECVLEFISFVTSEASNKCQKEKRKNINGEDII 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00185 98 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 97 IPR003958 -
Cca03g00185 98 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Cca03g00185 98 PRINTS CCAAT-binding transcription factor subunit A signature 84 98 - -
Cca03g00185 98 MobiDBLite consensus disorder prediction 1 22 - -
Cca03g00185 98 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 15 98 - -
Cca03g00185 98 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 98 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cca03g00185 98 SUPERFAMILY Histone-fold 37 98 IPR009072 GO:0046982
Cca03g00185 98 MobiDBLite consensus disorder prediction 8 22 - -
Cca03g00185 98 Gene3D Histone, subunit A 26 98 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00185 Cca-Chr3 2760582 2760878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00185 20 98 CCAAT-HAP3 Transcription Factor Family AT4G14540 64.557 4.17e-33 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca03g00185 CBFD_NFYB_HMF 4e-24 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00185 K08065 - gmx:100780647 136.732