Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00179 ATGGAGGAATTAGAAAGAAATTACAGTGGCATAATCATATGTGATGAATGTGTATGTACAGGTAAGGCGTTGTTCAGTGGAAATCAATACTATTTCTTCAGCAAAGTGAATGAAAACAGAACAACAGAAAATGGGTATTGGAAGGAAATAGGAATGACAGAACCTATATTGTCAACCGTTGACAAGAAAGTGGGAATGAAGAAGTACTTGGTATTCCACATCGGTGAAGCTCCACAAGACACAGAAACCAATTGGGTGATGCAAGAATATCATATATGTTCCTCTGGGTTTGACATGGCGTCATATCGAAGTGCTAGGAGAAGAAGAAAACATGATCAAAGTTGGAGCAAGTGGGTTTTGTGCAGAGTGTATGAGAAGAGGAGGTGTGAAGAAGGTGTAAAGTGCTATAGCGATGATGAGGATGAGAATGGATCAGAGCTTTCATGGCTAGACGAATTTTATCTGAGGTTGGATGATGATCTGGAAGAGATTGGCATGTCTAGCTAA 507 0.3984 MEELERNYSGIIICDECVCTGKALFSGNQYYFFSKVNENRTTENGYWKEIGMTEPILSTVDKKVGMKKYLVFHIGEAPQDTETNWVMQEYHICSSGFDMASYRSARRRRKHDQSWSKWVLCRVYEKRRCEEGVKCYSDDEDENGSELSWLDEFYLRLDDDLEEIGMSS 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00179 168 Gene3D NAC domain 11 130 IPR036093 GO:0003677|GO:0006355
Cca03g00179 168 Pfam No apical meristem (NAM) protein 23 92 IPR003441 GO:0003677|GO:0006355
Cca03g00179 168 ProSiteProfiles NAC domain profile. 1 126 IPR003441 GO:0003677|GO:0006355
Cca03g00179 168 PANTHER NAC TRANSCRIPTION FACTOR 56 21 165 - -
Cca03g00179 168 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 21 165 - -
Cca03g00179 168 SUPERFAMILY NAC domain 20 126 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00179 Cca-Chr3 2705674 2707390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00179 15 148 NAC Transcription Factor Family AT1G52890 37.324 5.32e-22 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca03g00179 NAM 3.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00179 - - gmx:100170711 263.077