Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00176 ATGAACGAAGGCCAAATTGAAATTACCATTCCTCACTTGTTCAGATGCCCCATCAGCTTGGACTTGTTCGAAGATCCTGTTACTTTGTGCACAGGCCAAACCTATGACAGATCAAGCATAGAGAAATGGTTTTCCGCAGGAAATCTCACATGCCCTGTCACAATGCAGAAGCTTCGTGATCCTTCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTCCAATTGGGTCACCAATTTCATCATCAAGGTAACTCTGCCACTATTGATTACTTAGCTTCACTAAAGCACACCCTTGAGTCTCCCCAATTGGAAAACAAGCTTCAAGCACTCGAGAAAATTAGAGCCCTCTCTGATGAGTATTGCTCCTTCAGAAAATCTTGCTTCCACCAACTCAGTTTCTTGCCCCTACTTTTGGAACTGGTTTTTGGCACTCACCTCTCGAAGTCTCACATGGAGTTCACTGAGTTAGCACTTTCTTGCATCCTAAAACTGCTTCCTCTTGTGAGCTTGGAGCCTTTGAGTATGATCAAAGATGAGTCTAAATTCAACAGCAGCACCACAAACAGAAGAGGTTGCGAGACAAGGCAGAAGAATTTGGCACCGTTGGCCATGGCAATAATAAAGAAACTTTTGGTACTAGAGAGTGCTAAAGAGGCTTTGGTGAACCACCCTAAAGGGGTTGAAACTTTGGTGAAGATGGTTTTCAGGGTGTGTAATCAAGAGTGTAGTGAGAGTGCTGTTGGAATACTTTCAATTATTTGTGGTGATTTTGGGCGTGCAAGAGAGGAAGCCATTGGTGCTGGAGTTTTGACTCAGTTGCTGTTTCTTCTGCAGAGTCAGTGTGGCACAAAAACTAAAACAAAGGCAAGAATGCTGCTCAAGTTGCTAAGATCAAAGTGGATTGAAGAACCAAAACATGTGTAG 936 0.438 MNEGQIEITIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWFSAGNLTCPVTMQKLRDPSIVPNHTLRHLIDQWLQLGHQFHHQGNSATIDYLASLKHTLESPQLENKLQALEKIRALSDEYCSFRKSCFHQLSFLPLLLELVFGTHLSKSHMEFTELALSCILKLLPLVSLEPLSMIKDESKFNSSTTNRRGCETRQKNLAPLAMAIIKKLLVLESAKEALVNHPKGVETLVKMVFRVCNQECSESAVGILSIICGDFGRAREEAIGAGVLTQLLFLLQSQCGTKTKTKARMLLKLLRSKWIEEPKHV 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00176 311 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Cca03g00176 311 PANTHER WDSAM1 PROTEIN 9 188 IPR045185 GO:0061630
Cca03g00176 311 SUPERFAMILY RING/U-box 5 78 - -
Cca03g00176 311 SUPERFAMILY ARM repeat 96 300 IPR016024 -
Cca03g00176 311 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Cca03g00176 311 CDD RING-Ubox_PUB 14 56 IPR045210 -
Cca03g00176 311 Gene3D - 93 309 IPR011989 -
Cca03g00176 311 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Cca03g00176 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 82 IPR013083 -
Cca03g00176 311 PANTHER OS02G0542800 PROTEIN 9 188 - -
Cca03g00176 311 PANTHER OS02G0542800 PROTEIN 197 303 - -
Cca03g00176 311 PANTHER WDSAM1 PROTEIN 197 303 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00176 Cca-Chr3 2665663 2666850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00176 7 300 U-box Gene Family AT1G23030 29.114 1.57e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00176 - - gmx:100819468 322.013