Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00172 ATGAAAGATAACAAGAGGAGGAAGAGAGCATTTGGAATCAATCAACAAGGAACAATATATAGCTGTGTGACCATATATTTTAGAAGATGGAAAAAGCTAGTAGCAGCAACAACGAACTGGAACTTTATTGCAGAACATCTTGAAGGAAGATCAGGAAAAAGTTGTAGACTGAGGTGGTACAATCAACTAGACCCAAACATCATAAAAAAGCCATTCACTGAAGAAGATGAGGAAATGCTCCTGGCACTTCACAATCTCAAGGGAAACAAATGGACTGCAATAGCCAGATTCTTCCCTGGAAAAACTGACAATTCTGTCAAGAATCACTTCCATGTACTAATGGCCAGAAGAGAAAGGGAGCGTTTGGCACTGTTTGGTGATTCATTTGATCATAATTCTCAAATCAGTTTCAACTTTATTAAAAACAAGGCCTTGTTTGATAAACTACCAACTCCTTGGACTTCATTCAGTGGATCTTCAACCATCACATCAAGTGCTAGAGAGAAAGTACCATTGTTTGATAATTATTTGGAATTGGACCATTTTTCTTCTTATAGTTCTCCTTCATCTGTTGGTTCTTCTATTCTTGACAGTTACCATAGTTTCACAGCACCAGGACTTCCCAGTGTAGGCAAGGTTGTTCCCCTTCCACAAAAAATTTCAAACTATGGTTGTGACCACAAAACTAAGGACACCATCAAAAGTTGCAAAAGAGGTAAACATGCACGTGATAGATCCATGACACTGTGCAAGTTGAGTACCAATGAACAAGAACCTCTTGATGATCTCAAGCAAAAGGGTGTTTCCTTCATAGACTTTCTTGGAGTGGGAATTTCTATCAGTGATGACAGTATTCGTGGACCATGA 867 0.3875 MKDNKRRKRAFGINQQGTIYSCVTIYFRRWKKLVAATTNWNFIAEHLEGRSGKSCRLRWYNQLDPNIIKKPFTEEDEEMLLALHNLKGNKWTAIARFFPGKTDNSVKNHFHVLMARRERERLALFGDSFDHNSQISFNFIKNKALFDKLPTPWTSFSGSSTITSSAREKVPLFDNYLELDHFSSYSSPSSVGSSILDSYHSFTAPGLPSVGKVVPLPQKISNYGCDHKTKDTIKSCKRGKHARDRSMTLCKLSTNEQEPLDDLKQKGVSFIDFLGVGISISDDSIRGP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00172 288 Gene3D - 70 124 - -
Cca03g00172 288 ProSiteProfiles Myb-like domain profile. 39 63 IPR001005 -
Cca03g00172 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 63 IPR017930 -
Cca03g00172 288 SMART sant 7 65 IPR001005 -
Cca03g00172 288 SMART sant 68 116 IPR001005 -
Cca03g00172 288 Pfam Myb-like DNA-binding domain 38 63 IPR001005 -
Cca03g00172 288 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Cca03g00172 288 CDD SANT 71 114 IPR001005 -
Cca03g00172 288 PANTHER MYB TRANSCRIPTION FACTOR 38 279 - -
Cca03g00172 288 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Cca03g00172 288 PANTHER MYB PROTEIN-RELATED 38 279 - -
Cca03g00172 288 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Cca03g00172 288 SUPERFAMILY Homeodomain-like 42 117 IPR009057 -
Cca03g00172 288 Gene3D - 19 68 - -
Cca03g00172 288 CDD SANT 39 61 IPR001005 -
Cca03g00172 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00172 Cca-Chr3 2636275 2638287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00172 39 279 MYB Transcription Factor Family AT4G33450 42.000 4.68e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca03g00172 Myb_DNA-binding 2.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00172 K09422 - ming:122071877 171.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00172 03 2636275 2638287 Cca05g00063 05 1364996 1366899 PCT