Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00170 ATGAATCTCTCCATGAAAAGTCTTGTTGCTCCGCTTCATGCCTCAGTTCCCGCTACAACTACCAGGAGCTGCAGGGCGGAGAATTTTGCAATTAAAGGGCGTAATCTGAGATTCTCATTCACCACGAGGCAAACAAAAGATGTAGAGGTTCTTAGGGATTGTTCGATTCGCATTCCTTGCGGGGAATTTTGGATGCTTCTCGGACCCAATGGGTGTGGAAAATCTACCCTCTTGAAGGTTTTGGCTGGTCTCTTGACTCCAACTTCTGGAACAGTGTACGTGAATGGGCCTAAAAGTTTCGTTTTCCAGAATCCAGATCATCAGGTGGTGATGCCTACTGTAGATGCCGATGTTGCATTTGGTCTCGGTAAGATCAATTTGACCAATGATGAAGTCAGATCTAGGGTGTCAAGAGCTTTGCATGCTGTAGGTCTGTCTGACTACATGAAGAGATCCGTCCAAACTCTGAGTGGTGGTCAGAAACAGAGGGTTGCCATTGCTGGTGCTCTTGCAGAAGCTTGTAAAGTTCTGTTGTTGGATGAGCTCACAACATTCTTAGATGAAACTGACCAGGTTGGAGTTATCAAAGCTGTTAGGAACTCTGTGGATACCTCTGAAGAAGTTACCGCATTATGGGTCACCCATCGTTTAGAAGAACTAGATTATGCAGATGGTGCCATCTACATGGAGGACGGGAAAGTTGTTAAGAAAGGAGATGCTGCTAGCATTAGGAGTTTCATTGAGGCCAGGCAGTCAGCCTATATTAACCTGATTAATTCTTAA 783 0.4508 MNLSMKSLVAPLHASVPATTTRSCRAENFAIKGRNLRFSFTTRQTKDVEVLRDCSIRIPCGEFWMLLGPNGCGKSTLLKVLAGLLTPTSGTVYVNGPKSFVFQNPDHQVVMPTVDADVAFGLGKINLTNDEVRSRVSRALHAVGLSDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQVGVIKAVRNSVDTSEEVTALWVTHRLEELDYADGAIYMEDGKVVKKGDAASIRSFIEARQSAYINLINS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00170 260 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 31 256 IPR003439 GO:0005524
Cca03g00170 260 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 19 256 - -
Cca03g00170 260 Gene3D - 26 256 IPR027417 -
Cca03g00170 260 Pfam ABC transporter 51 183 IPR003439 GO:0005524
Cca03g00170 260 SMART AAA_5 60 233 IPR003593 -
Cca03g00170 260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 248 IPR027417 -
Cca03g00170 260 CDD ABC_cobalt_CbiO_domain1 34 233 IPR015856 GO:0005524|GO:0016020|GO:0055085
Cca03g00170 260 ProSitePatterns ABC transporters family signature. 156 170 IPR017871 GO:0005524
Cca03g00170 260 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 19 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00170 Cca-Chr3 2611335 2615373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00170 34 258 Calmodulin-binding Proteins AT2G36910 28.862 2.67e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00170 - - ccaj:109809809 505.753