Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00167 ATGTGTGCAATAAAAGAAGTCAGGGTTGTCTCTGATGATCAAACATCAAAAGAGTGCCTCAAACAACTTAATCAGGAGATCCATTTGCTCAGTCAGCTTTCACATCCAAACATTGTTCAATACTATGGGAGTGATTTGGGAGAAGAAGCACTTTCTGTTTATTTGGAATATGTCTCGGGTGGTTCTATTCATAAATTACTTCAAGAATATGGGGCCTTCAAGGAGCCTGTCATTCAAAATTATACCAGGCAGATTGTGTCTGGACTTTCCTATCTTCACGGGAGAAATACAGTACATAGGGACATCAAAGGGGCTAACATACTTGTTGATCCTAATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCTAAACATATTAATGCATCTGCCTCAATGCTTTCTTTCAAAGGGAGTCCATACTGGATGGCACCTGAGGTTGTAATGAATACAAATGGCTATAGTCTTCCTGTTGATATATGGAGCTTGGGATGCACAATTCTTGAAATGGCAACATCAAAGCCTCCTTGGAGTCAGTATGAAGGGGTAGCTGCAATATTTAAAATTGGTAACAGCAAAGATATGCCTGAAATTCCTGATCATCTCTCAAGTGAGGCAAAGAATTTCATTCAGCTATGCTTACAAAGAGATCCATCAGCGCGCCCAACAGCTCAAATGTTACTGAATCATCCCTTTATACGAGATCAGTCAGCAACGAAAGCTACAAATGTCAGAATAACCAACGAGGCTTTCCCCAACATGTGTGATGGAAGTCGGACACCGCCAGCTTTAGAGTATTCCAGTAGAAGAAGTTTAACTTCACTGGATGGAGATTATGCAACAAAGCCAATTCCTGTAAACCCACGAGCAGCAAGGAGTCCAAGAGATAACACGAGAATGATCACCTCTTTACCAGTATCTCCCTGTTCAAGTCCAATGCGACAGTACGGGCCAGCACACAAGAGCTGTTTACTTTCACCTCCTCACCCAACTCACGCAATGATGGGACAAAATACCCTCCCGTCATATCCAATGAGATCAAATGCTACATTCACTCTTGATCCTTTCCATGAAACATCTTTTTACAAAGCCCACACACCAGGTGGATCCCCAAGAACAAGACGCATTTGA 1128 0.422 MCAIKEVRVVSDDQTSKECLKQLNQEIHLLSQLSHPNIVQYYGSDLGEEALSVYLEYVSGGSIHKLLQEYGAFKEPVIQNYTRQIVSGLSYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINASASMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTILEMATSKPPWSQYEGVAAIFKIGNSKDMPEIPDHLSSEAKNFIQLCLQRDPSARPTAQMLLNHPFIRDQSATKATNVRITNEAFPNMCDGSRTPPALEYSSRRSLTSLDGDYATKPIPVNPRAARSPRDNTRMITSLPVSPCSSPMRQYGPAHKSCLLSPPHPTHAMMGQNTLPSYPMRSNATFTLDPFHETSFYKAHTPGGSPRTRRI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00167 375 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 357 - -
Cca03g00167 375 PRINTS Tyrosine kinase catalytic domain signature 157 179 IPR001245 GO:0004672|GO:0006468
Cca03g00167 375 PRINTS Tyrosine kinase catalytic domain signature 91 109 IPR001245 GO:0004672|GO:0006468
Cca03g00167 375 PRINTS Tyrosine kinase catalytic domain signature 55 68 IPR001245 GO:0004672|GO:0006468
Cca03g00167 375 PRINTS Tyrosine kinase catalytic domain signature 201 223 IPR001245 GO:0004672|GO:0006468
Cca03g00167 375 PANTHER MAP KINASE KINASE KINASE 1 357 - -
Cca03g00167 375 MobiDBLite consensus disorder prediction 274 293 - -
Cca03g00167 375 ProSiteProfiles Protein kinase domain profile. 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00167 375 Gene3D Transferase(Phosphotransferase) domain 1 1 258 - -
Cca03g00167 375 SMART serkin_6 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00167 375 SUPERFAMILY Protein kinase-like (PK-like) 2 318 IPR011009 -
Cca03g00167 375 Pfam Protein kinase domain 2 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00167 Cca-Chr3 2596145 2604291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00167 1 294 MAP Kinase Kinase Kinase AT1G53570 71.622 2.60e-150 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca03g00167 Pkinase 2.3e-66 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02262 09 47849418 47855015 Cca03g00167 03 2596145 2604291 PCT
Cca09g02441 09 49768986 49777748 Cca03g00167 03 2596145 2604291 PCT