Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00165 ATGGACCCTCATCGCCGGCGCCGCCGCACGTGGTGCTGCACCTTCGCCGCCAGCCCCGACAACTCCAAGCCTGGCCCCCGCAAACCCGAACCTCACTCCAAACCTACATTCTCCCTCCCGACCTCCCCCAAATCCCGAATCGCCGCCCGCATCGACCCTCGCCGGATCCTCTCTCCGGGAAGAGTCTCGCCCATCGACTCCGATCccgtcgccggagccgccgttccctcgccctcaccctcaccctcgccggctccgCCATCTCCGGTGGCCGGCGACAGGGATGTGAGAATGAGCCTGAGAGGGAAGAACGGCGGGTGCATGGTTCTGGAGGTGAATTCGGGGGTTCTGTGTGCGAATTCCGAAGTGTTTGCGGGGTTGATTGCGGATTACAACAAAGGGGTTTCGAGTTTCAGTGGTAGCAACAAAATGTGTAGAATAGAGGTTCCTGAAGTTGAGAACTTGGGAGTGTTCAGAGAAACCATTGAACTCATGTTTGAGAACGAGGATGGGCTTACCAAACGCCTCCTTAACATTGGCGTTTTTCGATCCATTGACGTTTTGGAGGTTTCAGCAGGTATCATGTTCACCAAGGGTGTTTTGTCGTGTTTACAATACCTTGAAGCCGTGCCTTGGACTGAAGAAGAGGAAGAAAAACTGAGGAACCTATTCACAAGATTCAAGTTTGATGAAGCAACAACAAGAGACATTCTAGGAAGGCTTTACTTGCAAGATTCAGTAGATTCCTCTTCCCAGCCAAATGTAGCTAGACAATTAGTTTGGTCTATCACCACTTGTGTGGATGCCAAAGCAAGAAATGAACTTAAGTCACTAATGAAGGGTCTTCTTTGCAAAAGCTCAGTGTATGAGAAGAATCACCTTGACCTCAGCAAGGAGGATCTGTATTCTGTGTGCCACTCATGCTTGGACTCACTTGTAAGCCTCTTTGAGGAAGCATCAGATACCATCACTCCTGAAAAGCTATTAACAAAGAAAGATAAGAATAAGCCTCTAATTGAACGCATCTCGAGGCAAGTTGATAACATCAACTGGTTGCTAGAGATCATGCTTGATGGTCAAATAGCAGAGGATTTTGTGAACATATGGGCGGAACAGCACCAACTTGTTAAAATGCATGATGATGTTTCCCCCATGATTAGATATGAACTTAGCCGCATCTCAGCGATTCTCTTTGTTGCAATGGCTACAAGAAAATTGCAATGCAAGGTGGAAGCTAGATGGGGGCTTCTCCAAGCATGGTTTAGGCCTATGCTGTTGGACTTTGGTTGGTTGCAAAGATGCAGAAGAGGGCTTGATATAAAGGTATTGCAAGAGGCTATGGGACAGACACTTCTTACTCTACCTTTGAATCAACAATACTTGCTCTTCATGGAATGGTTTCGGCACTTCTCAAGCCATGGCACTGAATGTCCAAATCTAAGCAAGGCATTCCAGATTTGGTGGCGCAGATCGTTCTTAAGAGGGTCTGAAACTTTTGCCATTGAATCAAGGTAA 1515 0.4561 MDPHRRRRRTWCCTFAASPDNSKPGPRKPEPHSKPTFSLPTSPKSRIAARIDPRRILSPGRVSPIDSDPVAGAAVPSPSPSPSPAPPSPVAGDRDVRMSLRGKNGGCMVLEVNSGVLCANSEVFAGLIADYNKGVSSFSGSNKMCRIEVPEVENLGVFRETIELMFENEDGLTKRLLNIGVFRSIDVLEVSAGIMFTKGVLSCLQYLEAVPWTEEEEEKLRNLFTRFKFDEATTRDILGRLYLQDSVDSSSQPNVARQLVWSITTCVDAKARNELKSLMKGLLCKSSVYEKNHLDLSKEDLYSVCHSCLDSLVSLFEEASDTITPEKLLTKKDKNKPLIERISRQVDNINWLLEIMLDGQIAEDFVNIWAEQHQLVKMHDDVSPMIRYELSRISAILFVAMATRKLQCKVEARWGLLQAWFRPMLLDFGWLQRCRRGLDIKVLQEAMGQTLLTLPLNQQYLLFMEWFRHFSSHGTECPNLSKAFQIWWRRSFLRGSETFAIESR 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00165 504 MobiDBLite consensus disorder prediction 1 96 - -
Cca03g00165 504 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 4 504 IPR038920 -
Cca03g00165 504 PANTHER OS04G0278000 PROTEIN 4 504 - -
Cca03g00165 504 MobiDBLite consensus disorder prediction 75 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00165 Cca-Chr3 2557156 2559408 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00165 - - gmx:100777771 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02258 09 47808627 47812486 Cca03g00165 03 2557156 2559408 PCT
Cca09g02454 09 49987718 49990633 Cca03g00165 03 2557156 2559408 PCT